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Cucsat.G15882 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G15882
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationctg211:143916..151519
RNA-Seq ExpressionCucsat.G15882
SyntenyCucsat.G15882
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059756.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.21e-2042.48Show/hide
Query:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKKTASRALNKGHLTFLNMY
        K SK+   G + NGLF IK+V M    ++     LTEG+ WH R+S+IS KGL++LS QGI+  G+++KLSFCEHCVVGK+ + + +  +      L+  
Subjt:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKKTASRALNKGHLTFLNMY

Query:  TLIFGGTSSNSSL
             G S   SL
Subjt:  TLIFGGTSSNSSL
XP_031741722.1 uncharacterized protein LOC116403917 [Cucumis sativus]3.67e-2154.88Show/hide
Query:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKT
        +K SKV    +R NGLF+IK+V M  +A++     LTEG  WHKR+S IS KGL++LS Q IL  G+++ LSFCEHCVVGK+
Subjt:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKT
XP_038882336.1 uncharacterized mitochondrial protein AtMg00300-like [Benincasa hispida]2.83e-1846.43Show/hide
Query:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
        +K SK    G++ NG++V++ VQ + SA++      TEGE WHKR+S IS K ++ L+ QGIL  GI + LSFC+HCV+GK  +
Subjt:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
XP_038885858.1 uncharacterized mitochondrial protein AtMg00300-like [Benincasa hispida]7.98e-2146.08Show/hide
Query:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK---TASRALNKGHLTF
        +K SKV  VG + N L +++ V+M+ SA       LTE + WHKR+  ISEKG++ LS QGIL  GIS+ LSFCEHC++GK  +   T S+   K  L +
Subjt:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK---TASRALNKGHLTF

Query:  LN
        +N
Subjt:  LN
XP_038904349.1 uncharacterized mitochondrial protein AtMg00300-like [Benincasa hispida]8.27e-1844.05Show/hide
Query:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
        +K +K    GV+ NG+++++ VQ + S ++ I+   TEG  WHKR+  I+ KGL+ L+ +GIL  GI + LSFCEHCV GK  +
Subjt:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
TrEMBL top hitse value%identityAlignment
A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.30e-1145.07Show/hide
Query:  NGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
         GL+ +K+V   K A+++      E E WH+R+S ISEKGL  L  QG++ T   K+L FCEHC+ GK+K+
Subjt:  NGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
A0A5A7UY18 Gag_pre-integrs domain-containing protein3.21e-1751.81Show/hide
Query:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
        K S+V  VG + N LF IK+V+M+K A +     LT+ +  HKR+S IS KGLE LS QGIL   I+ KL   EHCV+GKT+K
Subjt:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
A0A5A7UZX2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.52e-2042.48Show/hide
Query:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKKTASRALNKGHLTFLNMY
        K SK+   G + NGLF IK+V M    ++     LTEG+ WH R+S+IS KGL++LS QGI+  G+++KLSFCEHCVVGK+ + + +  +      L+  
Subjt:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKKTASRALNKGHLTFLNMY

Query:  TLIFGGTSSNSSL
             G S   SL
Subjt:  TLIFGGTSSNSSL
A0A5C7I1V3 CCHC-type domain-containing protein1.56e-1136.8Show/hide
Query:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGK---TKKTASRALNKGHLTFL
        K S V   G +KNGL+++  V +  SA ++      +   WH+R++ +SEKGL  LS QG+L      KLSFCEHCV GK    K   S+   KG     
Subjt:  KYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGK---TKKTASRALNKGHLTFL

Query:  NMYTLIFGGTSSNSSLKMIKNFADM
          Y L+   T   S       FAD+
Subjt:  NMYTLIFGGTSSNSSLKMIKNFADM
A0A5C7ITL9 CCHC-type domain-containing protein9.98e-1242.86Show/hide
Query:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
        MK S V     ++NGL+++  V +I +A +A    L +   WH+R++ +SEKGL  LS QG+L      KLSFC+HCV GK  K
Subjt:  MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.6e-0427.87Show/hide
Query:  EFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKKTASRALNKGHLTFLNM
        + WHKR+  +SEKGL++L+ + ++S      +  C++C+ GK  + + +  ++  L  L++
Subjt:  EFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKKTASRALNKGHLTFLNM
P93293 Uncharacterized mitochondrial protein AtMg003003.0e-0532Show/hide
Query:  GVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
        G R + L++++       + LA E    E   WH R++ +S++G+E+L  +G L +     L FCE C+ GKT +
Subjt:  GVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
Arabidopsis top hitse value%identityAlignment
ATMG00300.1 Gag-Pol-related retrotransposon family protein2.1e-0632Show/hide
Query:  GVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK
        G R + L++++       + LA E    E   WH R++ +S++G+E+L  +G L +     L FCE C+ GKT +
Subjt:  GVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATTCCAAAGTAACTCCAGTTGGTGTTAGAAAAAATGGACTCTTTGTCATTAAAGATGTTCAAATGATTAAATCAGCCATATTAGCCATAGAACACACTTTGAC
TGAAGGAGAATTCTGGCATAAAAGAGTGTCTCAAATCAGTGAAAAGGGGCTAGAAGTGTTGTCAACACAAGGAATTCTCTCAACAGGCATATCAAAGAAACTGAGTTTTT
GTGAGCATTGTGTTGTTGGAAAGACAAAAAAGACAGCTTCAAGAGCTCTCAACAAAGGGCATCTTACATTCTTGAATATGTACACTCTAATCTTTGGGGGGACTAGCTCA
AACTCTTCCCTTAAGATGATCAAGAATTTTGCAGATATGAGTTCAATCAGCTTTGCAAAGATGAGG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTATTCCAAAGTAACTCCAGTTGGTGTTAGAAAAAATGGACTCTTTGTCATTAAAGATGTTCAAATGATTAAATCAGCCATATTAGCCATAGAACACACTTTGAC
TGAAGGAGAATTCTGGCATAAAAGAGTGTCTCAAATCAGTGAAAAGGGGCTAGAAGTGTTGTCAACACAAGGAATTCTCTCAACAGGCATATCAAAGAAACTGAGTTTTT
GTGAGCATTGTGTTGTTGGAAAGACAAAAAAGACAGCTTCAAGAGCTCTCAACAAAGGGCATCTTACATTCTTGAATATGTACACTCTAATCTTTGGGGGGACTAGCTCA
AACTCTTCCCTTAAGATGATCAAGAATTTTGCAGATATGAGTTCAATCAGCTTTGCAAAGATGAGG
Protein sequenceShow/hide protein sequence
MKYSKVTPVGVRKNGLFVIKDVQMIKSAILAIEHTLTEGEFWHKRVSQISEKGLEVLSTQGILSTGISKKLSFCEHCVVGKTKKTASRALNKGHLTFLNMYTLIFGGTSS
NSSLKMIKNFADMSSISFAKMR