CuGenDBv2

Gene ID	Cucsat.G15886
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	ribonuclease H2 subunit C
Genome location	ctg211:259558..262181
RNA-Seq Expression	Cucsat.G15886
Synteny	Cucsat.G15886
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component) GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

1.59e-92

79.17

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ +NERK EVIVDFDF  G+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        AS+   DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_008459055.1 PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo]

8.32e-109

89.88

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_011660323.1 uncharacterized protein C12B10.15c [Cucumis sativus]

1.25e-118

98.78

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASKH
        MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKAS+ 
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASKH

Query:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Subjt:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

1.31e-91

78.57

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ + ERK EVIVDFDF  G+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        AS+   DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

3.50e-96

83.93

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        MN +NERKGEVIVDFDF+  +D  ALD+SGKVHQLPC IKFDGPC VS YFKPKSTGIE DGL++EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        AS+   +SSPWQVKAKF NITYWNHDTLPSQDDTFQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

6.08e-119

98.78

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASKH
        MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKAS+ 
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASKH

Query:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Subjt:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A1S3C9A8 uncharacterized protein C12B10.15c

4.03e-109

89.88

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

4.03e-109

89.88

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A6J1EN41 uncharacterized protein C12B10.15c

6.34e-92

78.57

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ + ERK EVIVDFDF  G+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        AS+   DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A6J1KH29 uncharacterized protein C12B10.15c

2.58e-91

77.98

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ + ERK EVIVDFDF  G+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL+++ AYFRGRKLQGATISLPEGY GYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        AS+   DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA ASTALKN+S
Subjt:  ASKHCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

2.1e-08

31.36

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Query:  KVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVL-----GKKSKASKHCDDSSPWQVKAKFDNITYWNHDTL-
        K   LPC I +DGP PV  YF  K   I  +  +      RGR+L G  + LPE Y+G V+      +  + S+     S W + + F+ +  WN D + 
Subjt:  KVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVL-----GKKSKASKHCDDSSPWQVKAKFDNITYWNHDTL-

Query:  PSQDDTFQR-TFHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDTFQR-TFHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

9.4e-09

27.66

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Query:  ISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSK----------ASKHCDDSSPWQVK-------
        +   +H LPC +  DGP PV  +F P        G    E  FRGR L+G  +++P G  GYV+  + K               DD     ++       
Subjt:  ISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSK----------ASKHCDDSSPWQVK-------

Query:  ---AKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV
           A F   T W  +T+P  D   +    W ++A A+H  V
Subjt:  ---AKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.3e-50

59.62

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Query:  DFDFGTDPKAL-DISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK--------KSKASKHCDDSSP
        DF    D  ++ D+S +VHQLPC I+FDGP  VSHYFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP GYSG+VL +        K KAS   +D+  
Subjt:  DFDFGTDPKAL-DISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK--------KSKASKHCDDSSP

Query:  WQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKN
        W+VKAKF+N+TYWNHD+LPS+DDTF R+FHW ++A+ALHKPV  EDL + S   KN
Subjt:  WQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKN

Sequences

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CDS sequence

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ATGAATGATCAAAACGAGAGGAAAGGGGAAGTAATCGTCGATTTTGATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATATCAGTGGCAAAGTTCATCAGCTTCCCTG
TACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATCTTGAGGAAGCTTATTTTAGAGGAAGAA
AGTTGCAAGGAGCTACAATTTCTCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTAAAGCTTCTAAACATTGTGATGACTCAAGCCCTTGGCAGGTGAAG
GCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACCTTCCAACGTACTTTTCATTGGCTGACCGTTGCACAAGCATTGCACAAACC
TGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGA

mRNA sequence

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Protein sequence

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MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASKHCDDSSPWQVK
AKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

Cucsat.G15886 (gene) of Cucumber (B10) v3 genome