; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G16003 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G16003
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Genome locationctg2178:227488..229931
RNA-Seq ExpressionCucsat.G16003
SyntenyCucsat.G16003
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045802.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.11e-19590.61Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        MLFSLK STVCSRL RS  RFHS+PTHPSA NSTSPL F SSVHQSL FSLEKC+SMRELKVLHA+IILQGLVSQNITLGKLISFCSVSQ GDL YA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDHL QPNKFMFNCLIRGYSTSPHPINAI LY++MMRSGFLPNRFTLPFVLK+CASQLAYWEAFVVHC AIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        VFDEMSNRTLVSWNSMIGGYFRNGLCK AFLLFREMRE+GFQPD+FTLVHLLS+CSKSCRLDIGK VHHYVEITGIE D ILRNALLDMYAKCGDLLFAQ
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIFHRM  K
Subjt:  TIFHRMFTK

XP_004148060.2 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis sativus]1.21e-16694.09Show/hide
Query:  MRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCAS
        MRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCAS
Subjt:  MRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCAS

Query:  QLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICS
        QLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICS
Subjt:  QLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICS

Query:  KSCRLDIGKSVHHYVEITGIEFDLILRNALLDM-YAKCGDLLFAQTIFHRMFTK
        KSCRLDIGKSVHHYVEITGIEFDLILRNALLD+ Y+K G +  A+ IF ++  K
Subjt:  KSCRLDIGKSVHHYVEITGIEFDLILRNALLDM-YAKCGDLLFAQTIFHRMFTK

XP_008457803.1 PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis melo]2.01e-19690.61Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        MLFSLK STVCSRL RS  RFHS+PTHPSA NSTSPL F SSVHQSL FSLEKC+SMRELKVLHA+IILQGLVSQNITLGKLISFCSVSQ GDL YA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDHL QPNKFMFNCLIRGYSTSPHPINAI LY++MMRSGFLPNRFTLPFVLK+CASQLAYWEAFVVHC AIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        VFDEMSNRTLVSWNSMIGGYFRNGLCK AFLLFREMRE+GFQPD+FTLVHLLS+CSKSCRLDIGK VHHYVEITGIE D ILRNALLDMYAKCGDLLFAQ
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIFHRM  K
Subjt:  TIFHRMFTK

XP_022928049.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita moschata]1.61e-15375.08Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        ML  L  S   SRL RS FRFHS P  P++ +     DFKS VHQSL  SLE+CSSMR+LKVLHA+IILQGLVS+ +TLGKL+SFC+VSQ GDLHYA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDH  QPNKFMFNCLIRGYSTS HPI AI LY +MMRSGFLPN+FTLPFVLK+CASQLAYWE  +VHC  IRLG+LSHV V NALINAYAV GFVQCA Q
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        +FDEMS+RTLVSWNS+IGGY RNG CK AFLLFR+MR  GFQPD FTLVHL SIC++S  LD+GK VH YVEITGIEFD ILRNALLDMYAKCGDLL A+
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIF RM  K
Subjt:  TIFHRMFTK

XP_038900653.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benincasa hispida]5.78e-17381.88Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        M FSLK S+ CSRL RS FR HS+PTH SA  ST PLDFKS VHQ L  SLE+CSSMRELKVLHA+IILQGLVS+ +TLGKL+SFCSVSQ GDLHYA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDHL QPNKFMFNCLIRGYS S HPINAIFLY +M+RSGFLPN+FTLPFVLK+CASQLAYWEA  VHC AIRLG+LSHV V NALIN YAVFGFVQCA Q
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        +FDEMSNRTLVSWNSMIGGY RNGLCK AFLLF+EMRE+GFQPD+FTLVHLLSICS+S  LDIGK VHHYVEITGIE D ILRNALLDMYAKCGDLLFA+
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIF RM  K
Subjt:  TIFHRMFTK

TrEMBL top hitse value%identityAlignment
A0A0A0LLZ3 Uncharacterized protein6.70e-21095.16Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDM-YAKCGDLLFA
        VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLD+ Y+K G +  A
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDM-YAKCGDLLFA

Query:  QTIFHRMFTK
        + IF ++  K
Subjt:  QTIFHRMFTK

A0A1S3C6H9 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like9.75e-19790.61Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        MLFSLK STVCSRL RS  RFHS+PTHPSA NSTSPL F SSVHQSL FSLEKC+SMRELKVLHA+IILQGLVSQNITLGKLISFCSVSQ GDL YA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDHL QPNKFMFNCLIRGYSTSPHPINAI LY++MMRSGFLPNRFTLPFVLK+CASQLAYWEAFVVHC AIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        VFDEMSNRTLVSWNSMIGGYFRNGLCK AFLLFREMRE+GFQPD+FTLVHLLS+CSKSCRLDIGK VHHYVEITGIE D ILRNALLDMYAKCGDLLFAQ
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIFHRM  K
Subjt:  TIFHRMFTK

A0A5A7TQY7 Pentatricopeptide repeat-containing protein1.02e-19590.61Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        MLFSLK STVCSRL RS  RFHS+PTHPSA NSTSPL F SSVHQSL FSLEKC+SMRELKVLHA+IILQGLVSQNITLGKLISFCSVSQ GDL YA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDHL QPNKFMFNCLIRGYSTSPHPINAI LY++MMRSGFLPNRFTLPFVLK+CASQLAYWEAFVVHC AIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        VFDEMSNRTLVSWNSMIGGYFRNGLCK AFLLFREMRE+GFQPD+FTLVHLLS+CSKSCRLDIGK VHHYVEITGIE D ILRNALLDMYAKCGDLLFAQ
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIFHRM  K
Subjt:  TIFHRMFTK

A0A6J1EJQ7 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like7.77e-15475.08Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        ML  L  S   SRL RS FRFHS P  P++ +     DFKS VHQSL  SLE+CSSMR+LKVLHA+IILQGLVS+ +TLGKL+SFC+VSQ GDLHYA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDH  QPNKFMFNCLIRGYSTS HPI AI LY +MMRSGFLPN+FTLPFVLK+CASQLAYWE  +VHC  IRLG+LSHV V NALINAYAV GFVQCA Q
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        +FDEMS+RTLVSWNS+IGGY RNG CK AFLLFR+MR  GFQPD FTLVHL SIC++S  LD+GK VH YVEITGIEFD ILRNALLDMYAKCGDLL A+
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIF RM  K
Subjt:  TIFHRMFTK

A0A6J1I2L8 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like6.26e-15374.43Show/hide
Query:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV
        ML  L  S   SRL RS FRFHS+P  P++ +     DFKS VHQSL  SLE+CSSMR+LKVLHA+IILQGLVS+ +TLGKL+SFC+VSQ GDL YA LV
Subjt:  MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLV

Query:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ
        FDH  QPNKFMFNCLIRGYSTS HPINAIFLY +MMRSGFLPN+FTLPFVLK+CASQLAYWE  +VHC AIRLG+LSHV V NALIN YAV GFVQCA Q
Subjt:  FDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQ

Query:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ
        +FDEMS++TLVSWNS+IGGY RNG CK AFLLFR+MR  GFQPD FTLVHL SIC++S  LD+GK VH YVEITG EFD ILRNA+LDMYAKCGDLL A+
Subjt:  VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQ

Query:  TIFHRMFTK
        TIF RM  K
Subjt:  TIFHRMFTK

SwissProt top hitse value%identityAlignment
O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic9.2e-4535.29Show/hide
Query:  SVPTHPSANNSTSP-LDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST
        S+P HP+ +N   P  + + S H SL   +E+C S+R+LK  H  +I  G  S   +  KL +  ++S    L YA  VFD +P+PN F +N LIR Y++
Subjt:  SVPTHPSANNSTSP-LDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST

Query:  SPHPINAIFLYVQMM-RSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGY
         P P+ +I+ ++ M+  S   PN++T PF++K+ A   +      +H  A++  + S V+V N+LI+ Y   G +  A +VF  +  + +VSWNSMI G+
Subjt:  SPHPINAIFLYVQMM-RSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGY

Query:  FRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK
         + G    A  LF++M     +    T+V +LS C+K   L+ G+ V  Y+E   +  +L L NA+LDMY KCG +  A+ +F  M  K
Subjt:  FRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK

Q9FJY7 Pentatricopeptide repeat-containing protein At5g665206.0e-4434.36Show/hide
Query:  LEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGD-LHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPF
        L++CS   ELK +HAR++  GL+  +  + K +SFC  S   D L YA +VFD   +P+ F++N +IRG+S S  P  ++ LY +M+ S    N +T P 
Subjt:  LEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGD-LHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPF

Query:  VLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFD-------------------------------EMSNRTLVSWNSMIG
        +LK+C++  A+ E   +H Q  +LG  + VY  N+LIN+YAV G  + A+ +FD                               +M+ +  +SW +MI 
Subjt:  VLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFD-------------------------------EMSNRTLVSWNSMIG

Query:  GYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK
        GY +  + K A  LF EM+ +  +PD  +L + LS C++   L+ GK +H Y+  T I  D +L   L+DMYAKCG++  A  +F  +  K
Subjt:  GYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic1.2e-4735.44Show/hide
Query:  SVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVS-QVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST
        S P H   ++S  P D   + H SL   L  C +++ L+++HA++I  GL + N  L KLI FC +S     L YA  VF  + +PN  ++N + RG++ 
Subjt:  SVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVS-QVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST

Query:  SPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVH-------------------------------NALINAYA
        S  P++A+ LYV M+  G LPN +T PFVLKSCA   A+ E   +H   ++LG    +YVH                                ALI  YA
Subjt:  SPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVH-------------------------------NALINAYA

Query:  VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMY
          G+++ A ++FDE+  + +VSWN+MI GY   G  K A  LF++M +T  +PD+ T+V ++S C++S  +++G+ VH +++  G   +L + NAL+D+Y
Subjt:  VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMY

Query:  AKCGDLLFAQTIFHRM
        +KCG+L  A  +F R+
Subjt:  AKCGDLLFAQTIFHRM

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial7.3e-4234.75Show/hide
Query:  RLYRSFFRFHSVPTHPSANNSTSPLDFKSS----VHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPN
        +L RS +      T    ++   P+++ S+    +H  L   LEKC  +  LK + A++I+ GL+       +LI+FC++S+   L Y+  +   +  PN
Subjt:  RLYRSFFRFHSVPTHPSANNSTSPLDFKSS----VHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPN

Query:  KFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFL---PNRFTLPFVLKSCA----SQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQV
         F +N  IRG+S S +P  +  LY QM+R G     P+ FT P + K CA    S L +    + H   +RL ++SH  VHNA I+ +A  G ++ A +V
Subjt:  KFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFL---PNRFTLPFVLKSCA----SQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQV

Query:  FDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQT
        FDE   R LVSWN +I GY + G  + A  +++ M   G +PD  T++ L+S CS    L+ GK  + YV+  G+   + L NAL+DM++KCGD+  A+ 
Subjt:  FDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQT

Query:  IFHRM
        IF  +
Subjt:  IFHRM

Q9ZQA1 Pentatricopeptide repeat-containing protein At2g367304.3e-4238.38Show/hide
Query:  FKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRS
        FKS  HQ L F L+ CSS++ L  +H +I L  L + +  + +L+   S+S   DL +A  +  H        +N L RGYS+S  P+ +I++Y +M R 
Subjt:  FKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRS

Query:  GFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRE
        G  PN+ T PF+LK+CAS L       +  + ++ G    VYV N LI+ Y        A +VFDEM+ R +VSWNS++     NG     F  F EM  
Subjt:  GFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRE

Query:  TGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK
          F PD+ T+V LLS C  +  L +GK VH  V +  +E +  L  AL+DMYAK G L +A+ +F RM  K
Subjt:  TGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.3e-4935.44Show/hide
Query:  SVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVS-QVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST
        S P H   ++S  P D   + H SL   L  C +++ L+++HA++I  GL + N  L KLI FC +S     L YA  VF  + +PN  ++N + RG++ 
Subjt:  SVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVS-QVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST

Query:  SPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVH-------------------------------NALINAYA
        S  P++A+ LYV M+  G LPN +T PFVLKSCA   A+ E   +H   ++LG    +YVH                                ALI  YA
Subjt:  SPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVH-------------------------------NALINAYA

Query:  VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMY
          G+++ A ++FDE+  + +VSWN+MI GY   G  K A  LF++M +T  +PD+ T+V ++S C++S  +++G+ VH +++  G   +L + NAL+D+Y
Subjt:  VFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMY

Query:  AKCGDLLFAQTIFHRM
        +KCG+L  A  +F R+
Subjt:  AKCGDLLFAQTIFHRM

AT2G22410.1 SLOW GROWTH 15.2e-4334.75Show/hide
Query:  RLYRSFFRFHSVPTHPSANNSTSPLDFKSS----VHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPN
        +L RS +      T    ++   P+++ S+    +H  L   LEKC  +  LK + A++I+ GL+       +LI+FC++S+   L Y+  +   +  PN
Subjt:  RLYRSFFRFHSVPTHPSANNSTSPLDFKSS----VHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPN

Query:  KFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFL---PNRFTLPFVLKSCA----SQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQV
         F +N  IRG+S S +P  +  LY QM+R G     P+ FT P + K CA    S L +    + H   +RL ++SH  VHNA I+ +A  G ++ A +V
Subjt:  KFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFL---PNRFTLPFVLKSCA----SQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQV

Query:  FDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQT
        FDE   R LVSWN +I GY + G  + A  +++ M   G +PD  T++ L+S CS    L+ GK  + YV+  G+   + L NAL+DM++KCGD+  A+ 
Subjt:  FDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQT

Query:  IFHRM
        IF  +
Subjt:  IFHRM

AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.6e-4635.29Show/hide
Query:  SVPTHPSANNSTSP-LDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST
        S+P HP+ +N   P  + + S H SL   +E+C S+R+LK  H  +I  G  S   +  KL +  ++S    L YA  VFD +P+PN F +N LIR Y++
Subjt:  SVPTHPSANNSTSP-LDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYST

Query:  SPHPINAIFLYVQMM-RSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGY
         P P+ +I+ ++ M+  S   PN++T PF++K+ A   +      +H  A++  + S V+V N+LI+ Y   G +  A +VF  +  + +VSWNSMI G+
Subjt:  SPHPINAIFLYVQMM-RSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGY

Query:  FRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK
         + G    A  LF++M     +    T+V +LS C+K   L+ G+ V  Y+E   +  +L L NA+LDMY KCG +  A+ +F  M  K
Subjt:  FRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK

AT2G36730.1 Pentatricopeptide repeat (PPR) superfamily protein3.1e-4338.38Show/hide
Query:  FKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRS
        FKS  HQ L F L+ CSS++ L  +H +I L  L + +  + +L+   S+S   DL +A  +  H        +N L RGYS+S  P+ +I++Y +M R 
Subjt:  FKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRS

Query:  GFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRE
        G  PN+ T PF+LK+CAS L       +  + ++ G    VYV N LI+ Y        A +VFDEM+ R +VSWNS++     NG     F  F EM  
Subjt:  GFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRE

Query:  TGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK
          F PD+ T+V LLS C  +  L +GK VH  V +  +E +  L  AL+DMYAK G L +A+ +F RM  K
Subjt:  TGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.3e-4534.36Show/hide
Query:  LEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGD-LHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPF
        L++CS   ELK +HAR++  GL+  +  + K +SFC  S   D L YA +VFD   +P+ F++N +IRG+S S  P  ++ LY +M+ S    N +T P 
Subjt:  LEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGD-LHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPF

Query:  VLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFD-------------------------------EMSNRTLVSWNSMIG
        +LK+C++  A+ E   +H Q  +LG  + VY  N+LIN+YAV G  + A+ +FD                               +M+ +  +SW +MI 
Subjt:  VLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFD-------------------------------EMSNRTLVSWNSMIG

Query:  GYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK
        GY +  + K A  LF EM+ +  +PD  +L + LS C++   L+ GK +H Y+  T I  D +L   L+DMYAKCG++  A  +F  +  K
Subjt:  GYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTCTCTCTCAAATGTTCTACCGTTTGTTCCCGCCTCTACCGCTCATTCTTTCGTTTTCACTCCGTACCCACTCATCCTTCTGCTAACAACAGCACTTCTCCTCT
TGATTTCAAGTCGTCTGTTCATCAATCTCTTGACTTTTCATTAGAAAAATGCTCCTCCATGAGAGAACTCAAGGTTCTTCATGCCCGAATTATCCTCCAAGGATTGGTTT
CTCAAAATATCACTCTCGGAAAATTGATCTCTTTCTGCTCTGTTTCTCAAGTTGGGGATCTTCACTATGCCCACCTTGTTTTTGATCACCTTCCCCAACCCAATAAGTTT
ATGTTCAATTGCTTGATAAGGGGGTACTCCACTTCTCCACATCCAATCAATGCTATTTTTCTCTACGTTCAAATGATGCGATCTGGGTTTTTACCCAATCGATTTACTCT
CCCTTTTGTACTCAAGTCTTGTGCTTCTCAGCTCGCGTATTGGGAAGCTTTTGTTGTTCATTGCCAAGCTATTCGATTGGGGATGTTGTCTCATGTATATGTGCATAATG
CTCTGATTAATGCTTATGCTGTTTTTGGTTTTGTTCAATGTGCGTACCAAGTGTTTGATGAAATGTCTAATAGAACTCTGGTGTCCTGGAATTCGATGATTGGTGGGTAC
TTTAGGAATGGGCTTTGTAAGGGAGCGTTTTTGTTGTTTCGAGAGATGAGAGAGACGGGATTTCAGCCGGATAAGTTCACATTGGTTCATTTACTTTCCATTTGTTCAAA
AAGTTGTAGATTAGACATAGGTAAAAGTGTGCATCATTATGTAGAGATTACTGGGATTGAGTTTGATCTAATTTTAAGAAACGCTCTGTTGGATATGTATGCCAAATGTG
GGGATTTGCTTTTCGCTCAGACAATCTTCCATAGAATGTTCACAAAACTGTTTTTTCTTTTACTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTCTCTCTCAAATGTTCTACCGTTTGTTCCCGCCTCTACCGCTCATTCTTTCGTTTTCACTCCGTACCCACTCATCCTTCTGCTAACAACAGCACTTCTCCTCT
TGATTTCAAGTCGTCTGTTCATCAATCTCTTGACTTTTCATTAGAAAAATGCTCCTCCATGAGAGAACTCAAGGTTCTTCATGCCCGAATTATCCTCCAAGGATTGGTTT
CTCAAAATATCACTCTCGGAAAATTGATCTCTTTCTGCTCTGTTTCTCAAGTTGGGGATCTTCACTATGCCCACCTTGTTTTTGATCACCTTCCCCAACCCAATAAGTTT
ATGTTCAATTGCTTGATAAGGGGGTACTCCACTTCTCCACATCCAATCAATGCTATTTTTCTCTACGTTCAAATGATGCGATCTGGGTTTTTACCCAATCGATTTACTCT
CCCTTTTGTACTCAAGTCTTGTGCTTCTCAGCTCGCGTATTGGGAAGCTTTTGTTGTTCATTGCCAAGCTATTCGATTGGGGATGTTGTCTCATGTATATGTGCATAATG
CTCTGATTAATGCTTATGCTGTTTTTGGTTTTGTTCAATGTGCGTACCAAGTGTTTGATGAAATGTCTAATAGAACTCTGGTGTCCTGGAATTCGATGATTGGTGGGTAC
TTTAGGAATGGGCTTTGTAAGGGAGCGTTTTTGTTGTTTCGAGAGATGAGAGAGACGGGATTTCAGCCGGATAAGTTCACATTGGTTCATTTACTTTCCATTTGTTCAAA
AAGTTGTAGATTAGACATAGGTAAAAGTGTGCATCATTATGTAGAGATTACTGGGATTGAGTTTGATCTAATTTTAAGAAACGCTCTGTTGGATATGTATGCCAAATGTG
GGGATTTGCTTTTCGCTCAGACAATCTTCCATAGAATGTTCACAAAACTGTTTTTTCTTTTACTTCCATGA
Protein sequenceShow/hide protein sequence
MLFSLKCSTVCSRLYRSFFRFHSVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKF
MFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGY
FRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDMYAKCGDLLFAQTIFHRMFTKLFFLLLP