CuGenDBv2

Gene ID	Cucsat.G16186
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	DNA repair protein XRCC2 homolog isoform X2
Genome location	ctg2231:491292..498679
RNA-Seq Expression	Cucsat.G16186
Synteny	Cucsat.G16186
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0005657 - replication fork (cellular component) GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domains	IPR030547 - DNA repair protein XRCC2

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8648111.1 hypothetical protein Csa_004719 [Cucumis sativus]

6.22e-80

96.09

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTN
        SSCEHQPTYSSEWLLPSLGFLDKFIVTN
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTN

XP_008456835.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]

5.00e-74

88.28

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTN
        SSCEHQPTYSSEWLLPSLGF+DKFIVTN
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTN

XP_008456836.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]

1.85e-79

88.89

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
        SSCEHQPTYSSEWLLPSLGF+DKFIVTNAGVFSVP
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP

XP_011655113.1 DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus]

2.26e-85

96.3

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
        SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP

XP_031741381.1 DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus]

1.65e-85

100

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Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
        TYSSEWLLPSLGFLDKFIVTNAGVFSVP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMH0 RECA_2 domain-containing protein

1.09e-85

96.3

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
        SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP

A0A1S3C3R7 DNA repair protein XRCC2 homolog isoform X1

2.42e-74

88.28

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTN
        SSCEHQPTYSSEWLLPSLGF+DKFIVTN
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTN

A0A1S3C491 DNA repair protein XRCC2 homolog isoform X2

8.94e-80

88.89

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
        SSCEHQPTYSSEWLLPSLGF+DKFIVTNAGVFSVP
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP

A0A6J1GYM0 DNA repair protein XRCC2 homolog isoform X2

6.60e-70

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K+LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
        SSCEHQ  Y SEWLLPSLG LDKFIV NAGVF VP
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP

A0A6J1K7N3 DNA repair protein XRCC2 homolog isoform X2

1.09e-68

77.78

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Query:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL
        P W    KGFSLAN+LEAAVEE++KLLLVHPSIVIASKATIFGDRSSD V+R+K+ SE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +
Subjt:  PQW----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL

Query:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
        SSCEHQ  Y SEWLLPSLG LDKFIV NAG+F VP
Subjt:  SSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP

SwissProt top hits

e value

%identity

Alignment

Q682D3 DNA repair protein XRCC2 homolog

1.4e-16

38.52

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Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G          +RE+MPS+WQ+FVTH++ +R S ++  L + + 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH

Query:  Q-PTYSSEWLLPSLGFLDKFIV
            YS EWL P L  +D+FIV
Subjt:  Q-PTYSSEWLLPSLGFLDKFIV

Arabidopsis top hits

e value

%identity

Alignment

AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)

9.8e-18

38.52

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Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G          +RE+MPS+WQ+FVTH++ +R S ++  L + + 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH

Query:  Q-PTYSSEWLLPSLGFLDKFIV
            YS EWL P L  +D+FIV
Subjt:  Q-PTYSSEWLLPSLGFLDKFIV

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)

9.8e-18

38.52

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Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G          +RE+MPS+WQ+FVTH++ +R S ++  L + + 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH

Query:  Q-PTYSSEWLLPSLGFLDKFIV
            YS EWL P L  +D+FIV
Subjt:  Q-PTYSSEWLLPSLGFLDKFIV

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)

1.6e-04

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Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDR
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ ++
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDR

Sequences

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CDS sequence

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CCAACTATTATAAAAACGAAAAGGAGATGGCCCCAATGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCC
GAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATG
GTGGACTAGGTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGATGAACATCTTAAATTGAGCAGTTGTGAG
CATCAACCAACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGCTGGCGTCTTTTCAGTACCCTGA

mRNA sequence

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Protein sequence

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PTIIKTKRRWPQWKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCE
HQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP

Cucsat.G16186 (gene) of Cucumber (B10) v3 genome