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Cucsat.G16187 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G16187
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA repair protein XRCC2 homolog isoform X3
Genome locationctg2231:522126..531530
RNA-Seq ExpressionCucsat.G16187
SyntenyCucsat.G16187
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013632 - DNA recombination and repair protein Rad51-like, C-terminal
IPR020588 - DNA recombination and repair protein RecA-like, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648111.1 hypothetical protein Csa_004719 [Cucumis sativus]2.10e-10098.67Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

XP_008456836.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]1.80e-9493.33Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRI+EA SNGSL+TGDGENFDALYATCLRRF YIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

XP_008456838.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo]6.77e-9593.33Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRI+EA SNGSL+TGDGENFDALYATCLRRF YIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

XP_011655113.1 DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus]1.51e-10098.67Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

XP_031741381.1 DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus]7.57e-10198.67Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

TrEMBL top hitse value%identityAlignment
A0A0A0KMH0 RECA_2 domain-containing protein7.32e-10198.67Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

A0A1S3C3R7 DNA repair protein XRCC2 homolog isoform X11.20e-9493.33Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRI+EA SNGSL+TGDGENFDALYATCLRRF YIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

A0A1S3C456 DNA repair protein XRCC2 homolog isoform X33.28e-9593.33Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRI+EA SNGSL+TGDGENFDALYATCLRRF YIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

A0A1S3C491 DNA repair protein XRCC2 homolog isoform X28.71e-9593.33Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRI+EA SNGSL+TGDGENFDALYATCLRRF YIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

A0A6J1KC81 DNA repair protein XRCC2 homolog isoform X32.88e-8082Show/hide
Query:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL
        MAL QWIDGDESA+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEW+GI YGGL C  VFIDLDCRLDI+RL QVL
Subjt:  MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVL

Query:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        KLRI+E   NG     D  NFDALY TCLRRF YIRCYDSFEFLATLK +
Subjt:  KLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

SwissProt top hitse value%identityAlignment
O43543 DNA repair protein XRCC25.1e-0932.41Show/hide
Query:  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV
        ES +E+L R L+ R+SL  + P L      P+  G+++E  GP G+ KT++L      CILPK       GGL    +FID D   D+ RL+ +L+ R+ 
Subjt:  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV

Query:  EATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        +++             + +   CL RF  + C  S   L TL +L
Subjt:  EATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

Q682D3 DNA repair protein XRCC2 homolog1.7e-4454.94Show/hide
Query:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV
        WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK W+GIHYGGLG   +F+DLDCR D+ RL Q+LK R++
Subjt:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV

Query:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLKAL
        +A    NG+    +  N                + LYA+C++RF Y+RCYDS E L++LK L
Subjt:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLKAL

Q9CX47 DNA repair protein XRCC25.6e-0832.41Show/hide
Query:  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV
        ES +E+L R L+ R+SL  + P L      P+  G++ E  GP G+ KT++L      CILPK       GGL    +FID D   D+ RL+ VL+ R+ 
Subjt:  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV

Query:  EATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL
        +++             +     CL R     C  S + L TL +L
Subjt:  EATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

Arabidopsis top hitse value%identityAlignment
AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)1.2e-4554.94Show/hide
Query:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV
        WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK W+GIHYGGLG   +F+DLDCR D+ RL Q+LK R++
Subjt:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV

Query:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLKAL
        +A    NG+    +  N                + LYA+C++RF Y+RCYDS E L++LK L
Subjt:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLKAL

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)1.2e-4554.94Show/hide
Query:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV
        WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK W+GIHYGGLG   +F+DLDCR D+ RL Q+LK R++
Subjt:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV

Query:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLKAL
        +A    NG+    +  N                + LYA+C++RF Y+RCYDS E L++LK L
Subjt:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLKAL

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)3.4e-4555Show/hide
Query:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV
        WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK W+GIHYGGLG   +F+DLDCR D+ RL Q+LK R++
Subjt:  WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIV

Query:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLK
        +A    NG+    +  N                + LYA+C++RF Y+RCYDS E L++LK
Subjt:  EAT--SNGSLSTGDGENF---------------DALYATCLRRFSYIRCYDSFEFLATLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTCGGTCAGTGGATCGACGGCGATGAGAGCGCCTCGGAGATGCTTGGCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCGTGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAAATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAGTGGGATCC
ACTACGGAGGCTTGGGATGCCCTGCAGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGCTCCAAGTTCTGAAGCTTCGAATTGTGGAAGCCACTAGCAAT
GGATCCTTAAGTACAGGAGATGGGGAAAATTTTGATGCATTATATGCTACATGCTTGAGAAGATTCTCTTACATCCGTTGCTATGACAGTTTTGAATTCCTTGCCACTCT
CAAGGCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCTCGGTCAGTGGATCGACGGCGATGAGAGCGCCTCGGAGATGCTTGGCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCGTGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAAATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAGTGGGATCC
ACTACGGAGGCTTGGGATGCCCTGCAGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGCTCCAAGTTCTGAAGCTTCGAATTGTGGAAGCCACTAGCAAT
GGATCCTTAAGTACAGGAGATGGGGAAAATTTTGATGCATTATATGCTACATGCTTGAGAAGATTCTCTTACATCCGTTGCTATGACAGTTTTGAATTCCTTGCCACTCT
CAAGGCTCTTTAG
Protein sequenceShow/hide protein sequence
MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSN
GSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL