CuGenDBv2

Gene ID	Cucsat.G16291
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	protein TIC 40, chloroplastic isoform X2
Genome location	ctg2246:419940..421944
RNA-Seq Expression	Cucsat.G16291
Synteny	Cucsat.G16291
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148914.1 protein TIC 40, chloroplastic [Cucumis sativus]

1.73e-83

100

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

XP_008463124.1 PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo]

9.81e-83

99.29

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTSPPKFLFLTYSS SSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

XP_008463125.1 PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo]

9.01e-83

99.29

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTSPPKFLFLTYSS SSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

XP_038877065.1 protein TIC 40, chloroplastic isoform X1 [Benincasa hispida]

1.81e-74

91.49

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTSPPK LFLTYSSTSSISTP+RT+QLC TRR ++SRI  PPRI ASA+NRRPNHRILVAERFA+VSSSTTSNDSSSVGVPSVSIPPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

XP_038877066.1 protein TIC 40, chloroplastic isoform X2 [Benincasa hispida]

1.67e-74

91.49

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTSPPK LFLTYSSTSSISTP+RT+QLC TRR ++SRI  PPRI ASA+NRRPNHRILVAERFA+VSSSTTSNDSSSVGVPSVSIPPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CIG9 protein TIC 40, chloroplastic isoform X1

4.75e-83

99.29

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTSPPKFLFLTYSS SSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

A0A1S3CIH5 protein TIC 40, chloroplastic isoform X2

4.36e-83

99.29

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTSPPKFLFLTYSS SSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

A0A6J1FE53 protein TIC 40, chloroplastic-like isoform X2

1.37e-73

89.36

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTS PKF+FL YSSTSSISTP+RTNQLC +RRL+ SRIK PPRILASA NRR NHRI+VAERFA+VSSSTTSN+SSSVGVPSVS+PPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

A0A6J1JYZ5 protein TIC 40, chloroplastic-like isoform X2

6.83e-74

89.36

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTS PKF+FL YSSTSSISTP+RTNQLC +RRL+ SRIK PPRILASA+NRR NHRI+VAERFA+VSSSTTSN+SSSVGVPSVS+PPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

A0A6J1K0V5 protein TIC 40, chloroplastic-like isoform X1

7.41e-74

89.36

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG
        MDRLNLALTS PKF+FL YSSTSSISTP+RTNQLC +RRL+ SRIK PPRILASA+NRR NHRI+VAERFA+VSSSTTSN+SSSVGVPSVS+PPPSSYVG
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVG

Query:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
Subjt:  SPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

SwissProt top hits

e value

%identity

Alignment

Q8GT66 Protein TIC 40, chloroplastic

1.9e-18

47.55

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Query:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASA--LNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSY
        M+ LNLAL S PK L L +SS+ ++ +  R +    T R+S++   S     AS    N +     + A  FA++SSS    +++SVGV     PPP S 
Subjt:  MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASA--LNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSY

Query:  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        VGSPLFW+G+GVG SALF+ VAS +KKYAMQQAFK+MM QMN+
Subjt:  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

Q9FMD5 Protein TIC 40, chloroplastic

1.1e-16

45.45

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Query:  SPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHR-------ILVAER---FATVSSSTTSNDSSSVGVPSVSIPPP-SSY
        S PK L +  + TSS+  P+  ++      L  S+I       ASA ++ P+ R       ++V +R   FA++ SS+    ++SV  PSV +PPP SS 
Subjt:  SPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHR-------ILVAER---FATVSSSTTSNDSSSVGVPSVSIPPP-SSY

Query:  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        +GSPLFW+GVGVGLSALF++V S LKKYAMQ A KTMM+QMN+
Subjt:  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

Arabidopsis top hits

e value

%identity

Alignment

AT5G16620.1 hydroxyproline-rich glycoprotein family protein

7.5e-18

45.45

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Query:  SPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHR-------ILVAER---FATVSSSTTSNDSSSVGVPSVSIPPP-SSY
        S PK L +  + TSS+  P+  ++      L  S+I       ASA ++ P+ R       ++V +R   FA++ SS+    ++SV  PSV +PPP SS 
Subjt:  SPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHR-------ILVAER---FATVSSSTTSNDSSSVGVPSVSIPPP-SSY

Query:  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS
        +GSPLFW+GVGVGLSALF++V S LKKYAMQ A KTMM+QMN+
Subjt:  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNS

Sequences

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CDS sequence

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ATGGATAGGCTCAATTTAGCCCTAACATCTCCTCCCAAGTTTCTTTTCCTCACATACTCTTCTACTTCTTCTATCTCCACTCCCTCCAGAACCAATCAATTATGTGCAAC
CAGGCGTTTATCAAGCTCAAGGATTAAGTCTCCTCCCAGAATTCTTGCTTCTGCTCTTAATCGTCGACCCAACCACCGTATACTCGTGGCCGAACGTTTTGCAACGGTTT
CTTCTTCTACTACCAGCAATGACTCGTCTTCTGTTGGTGTTCCATCAGTATCTATTCCTCCCCCTTCCTCATATGTTGGGTCGCCTCTCTTTTGGGTTGGTGTTGGTGTT
GGGCTTTCAGCATTATTTACATGGGTGGCTTCTTACTTAAAGAAATATGCAATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCT

mRNA sequence

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Protein sequence

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MDRLNLALTSPPKFLFLTYSSTSSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGV
GLSALFTWVASYLKKYAMQQAFKTMMSQMNS

Cucsat.G16291 (gene) of Cucumber (B10) v3 genome