CuGenDBv2

Gene ID	Cucsat.G16292
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	protein TIC 40, chloroplastic
Genome location	ctg2246:440463..443892
RNA-Seq Expression	Cucsat.G16292
Synteny	Cucsat.G16292
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0045037 - protein import into chloroplast stroma (biological process) GO:0009706 - chloroplast inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR006636 - Heat shock chaperonin-binding IPR041243 - STI1 domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0066218.1 protein TIC 40 [Cucumis melo var. makuwa]

1.26e-74

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

TYK08643.1 protein TIC 40 [Cucumis melo var. makuwa]

1.26e-74

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

XP_004148914.1 protein TIC 40, chloroplastic [Cucumis sativus]

6.22e-73

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

XP_008463124.1 PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo]

6.22e-73

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

XP_008463125.1 PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo]

5.74e-73

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KML6 STI1 domain-containing protein

8.02e-77

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

A0A1S3CIG9 protein TIC 40, chloroplastic isoform X1

3.01e-73

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

A0A1S3CIH5 protein TIC 40, chloroplastic isoform X2

2.78e-73

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

A0A5A7VET2 Protein TIC 40

6.09e-75

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

A0A5D3C9U5 Protein TIC 40

6.09e-75

100

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSGAP
Subjt:  VFNKISELFPGVSGAP

SwissProt top hits

e value

%identity

Alignment

P50503 Hsc70-interacting protein

6.3e-07

40.35

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Query:  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS
        +++I+++PE+  A Q+P V  A  D +QNP +++KYQN+ +VM++ +K+S  F G S
Subjt:  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS

Q5ZLF0 Hsc70-interacting protein

1.4e-06

41.51

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Query:  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELF
        +++I+++PE+  A Q+P V AA  D +QNP +++KYQN+ +VM +  K+S  F
Subjt:  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELF

Q8GT66 Protein TIC 40, chloroplastic

2.2e-52

84.48

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        MMQNP YRQQLE MLNNM G  +WD R+MD+LKNFDL+SP+VKQQFDQIGL+P+EVISKIMANP++AMAFQNPRVQAAIMDCSQNP+SI KYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSGAP
        VFNKISELFPGVSG P
Subjt:  VFNKISELFPGVSGAP

Q99L47 Hsc70-interacting protein

1.8e-06

38.6

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Query:  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS
        +++I+++PE+  A Q+P V  A  D +QNP +++KYQ++ +VM++ +K+S  F G S
Subjt:  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS

Q9FMD5 Protein TIC 40, chloroplastic

2.5e-48

78.07

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        M++NP YRQQL++MLNNMSGS +WD R+ D+LKNFDL+SPEVKQQF+QIGLTPEEVISKIM NP++AMAFQNPRVQAA+M+CS+NP++I KYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSG
        VFNKIS+LFPG++G
Subjt:  VFNKISELFPGVSG

Arabidopsis top hits

e value

%identity

Alignment

AT4G22670.1 HSP70-interacting protein 1

4.6e-05

38.89

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Query:  SKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPG
        SKI+ +PE+  AF +P V AA+ D  +NP ++ K+Q + +V  V  K+   F G
Subjt:  SKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPG

AT5G16620.1 hydroxyproline-rich glycoprotein family protein

1.8e-49

78.07

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Query:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD
        M++NP YRQQL++MLNNMSGS +WD R+ D+LKNFDL+SPEVKQQF+QIGLTPEEVISKIM NP++AMAFQNPRVQAA+M+CS+NP++I KYQNDKEVMD
Subjt:  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMD

Query:  VFNKISELFPGVSG
        VFNKIS+LFPG++G
Subjt:  VFNKISELFPGVSG

Sequences

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CDS sequence

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ATGATGCAAAATCCATTATATCGCCAACAATTAGAAGAAATGCTTAACAATATGAGTGGAAGCCCACAATGGGACGGTCGCCTCATGGATTCTTTGAAGAACTTTGATCT
TAGTAGCCCTGAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCGGAAATTGCAATGGCATTTCAAAATCCAA
GAGTTCAAGCAGCCATCATGGATTGTTCACAAAATCCACTGAGTATCACAAAGTATCAAAACGACAAAGAGGTCATGGACGTTTTCAATAAGATATCAGAACTATTCCCC
GGAGTTTCTGGAGCACCATGA

mRNA sequence

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Protein sequence

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MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFP
GVSGAP

Cucsat.G16292 (gene) of Cucumber (B10) v3 genome