CuGenDBv2

Gene ID	Cucsat.G16322
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Retrotransposon protein
Genome location	ctg2246:576269..581535
RNA-Seq Expression	Cucsat.G16322
Synteny	Cucsat.G16322
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

3.09e-65

50.68

Show/hide

Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP CSGFGWND+ +CIVAE+++FD W  +HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D V  +   D +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSKRKR     DS D++   ++  N QL  IAEWP    Q     R E++ HL++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F E+PDH+K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

KAA0048362.1 retrotransposon protein [Cucumis melo var. makuwa]

2.74e-65

50.68

Show/hide

Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP CSGFGWND+ +CIVAE+++FD W  +HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D V  +   D +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSKRKR     DS D++   ++  N QL  IAEWP    Q     R E++ HL++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F E+PDH+K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]

8.21e-65

48.42

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Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MR P CSGFGWND+ +CI+AE+++FD WV++HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D    +  LD +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSK KR     DS D++   ++  N QL  IAEWP    Q     R E++  L++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F ++PD++K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

KAA0057083.1 retrotransposon protein [Cucumis melo var. makuwa]

2.48e-64

50.23

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Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP CSGFGWND+ +CIVAE+++FD W  +HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D    +   D +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSKRKR     DS D++   ++  N QL  IAEWP    Q     R E++ HL++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F E+PDH+K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]

4.60e-69

53.42

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Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP+C GFGWNDD++CIVAE+++FD+WVR+HPAAKGLLNK F YYD+L+YVF KDRA G  AE F ++GSN P   +   P D  DMEFPSMSS R NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVILDCTNAQ---LRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        S DD+   RPSR +D R +SSGSKR+R  Q +++ DVI D    Q   LR IAEWP   L+ E+ VR EV+  L++IP+LS  D+ +C  ++M   + M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVILDCTNAQ---LRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILR
         F E+ +  K  YC V++R
Subjt:  TFFEMPDHLKRAYCRVILR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TXU5 Retrotransposon protein

1.33e-65

50.68

Show/hide

Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP CSGFGWND+ +CIVAE+++FD W  +HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D V  +   D +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSKRKR     DS D++   ++  N QL  IAEWP    Q     R E++ HL++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F E+PDH+K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

A0A5A7U4M2 Retrotransposon protein

3.98e-65

48.42

Show/hide

Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MR P CSGFGWND+ +CI+AE+++FD WV++HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D    +  LD +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSK KR     DS D++   ++  N QL  IAEWP    Q     R E++  L++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F ++PD++K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

A0A5A7UME4 Retrotransposon protein

1.20e-64

50.23

Show/hide

Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP CSGFGWND+ +CIVAE+++FD W  +HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D    +   D +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSKRKR     DS D++   ++  N QL  IAEWP    Q     R E++ HL++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F E+PDH+K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

A0A5D3CBF7 Retrotransposon protein

1.70e-64

50.23

Show/hide

Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP CSGFGWND+ +CIVAE+++FD W  +HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D    +   D +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSKRKR     DS D++   ++  N QL  IAEWP    Q     R E++ HL++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F E+PDH+K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

A0A5D3DPR5 Retrotransposon protein

1.50e-65

50.68

Show/hide

Query:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM
        MRGP CSGFGWND+ +CIVAE+++FD W  +HPAAKGLLNK F +YD+LSYVF KDRATG RAE F +IGSN+P   D V  +   D +FP M S  +NM
Subjt:  MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINM

Query:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH
        SPDD+M  R +R S+ R  SSGSKRKR     DS D++   ++  N QL  IAEWP    Q     R E++ HL++IP+L+  D  + + ++M     M 
Subjt:  SPDDMMSRRPSRSSDVRPSSSGSKRKRIMQQIDSFDVI---LDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMH

Query:  TFFEMPDHLKRAYCRVILRNN
         F E+PDH+K  YC +IL+ N
Subjt:  TFFEMPDHLKRAYCRVILRNN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

6.6e-05

29.63

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Query:  SGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATG
        +GF W+     ++A+ DI++++++AHP A+    K    Y +L ++F K+ + G
Subjt:  SGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATG

AT4G02210.1 unknown protein

1.9e-04

30.95

Show/hide

Query:  GFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDL
        GF W+++ Q + A+ +++  +++AH  A+  + +P  YY DL
Subjt:  GFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDL

AT4G02210.2 unknown protein

1.9e-04

30.95

Show/hide

Query:  GFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDL
        GF W+++ Q + A+ +++  +++AH  A+  + +P  YY DL
Subjt:  GFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDL

AT5G27260.1 unknown protein

3.0e-05

33.33

Show/hide

Query:  SGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARA
        SGFGW+   +   A  +++  +++AHP  K L    F ++D+L  +F +  ATG  A
Subjt:  SGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCGTGGTCCTGCGTGCAGTGGGTTCGGGTGGAATGATGACCTTCAGTGCATCGTTGCGGAGCGGGATATTTTCGACAGCTGGGTCCGGGCACATCCTGCAGCGAAAGG
CCTACTAAACAAACCTTTTTCGTATTACGATGATTTATCATACGTATTCGAAAAAGATCGTGCGACAGGGGCACGTGCAGAAATGTTCACGAATATCGGGTCTAACAACC
CTGTAGCTAATGACAGAGTACGACCGGAGGATGACCTTGATATGGAGTTCCCTAGTATGTCGAGCCTGAGGATAAACATGTCTCCAGATGACATGATGAGCAGGCGTCCT
TCGAGGTCGAGTGATGTTAGACCTAGCTCGAGCGGAAGTAAGAGGAAGCGAATCATGCAGCAGATCGATAGCTTTGACGTAATTCTGGATTGTACGAATGCACAACTGCG
AGCGATTGCAGAATGGCCGGATAAGACCCTACAGAGTGAAGCATTTGTGCGGTGGGAAGTACTGGCACACCTGCAATCCATTCCAGACCTCAGTGAAGAGGACCTAATGA
AATGTATAATGGTCGTGATGGAAAAAACGTCATTAATGCATACATTTTTTGAGATGCCCGATCACCTGAAGCGTGCCTACTGTAGGGTCATTCTACGAAATAACCCATAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MRGPACSGFGWNDDLQCIVAERDIFDSWVRAHPAAKGLLNKPFSYYDDLSYVFEKDRATGARAEMFTNIGSNNPVANDRVRPEDDLDMEFPSMSSLRINMSPDDMMSRRP
SRSSDVRPSSSGSKRKRIMQQIDSFDVILDCTNAQLRAIAEWPDKTLQSEAFVRWEVLAHLQSIPDLSEEDLMKCIMVVMEKTSLMHTFFEMPDHLKRAYCRVILRNNP

Cucsat.G16322 (gene) of Cucumber (B10) v3 genome