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Cucsat.G16326 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G16326
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationctg2246:707689..708998
RNA-Seq ExpressionCucsat.G16326
SyntenyCucsat.G16326
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026174.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]4.40e-7362.04Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHR+PLPSLDA IQEILFEE+RL IN +K SD VLASTY+P  AS+ FCKNCKL GHKFINCPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL---IQISDLQSLLNQLISS-SSALAVSSG---------------------------------------SGS
        P   ST+ K FTKP +SSV A  ++D+S     QISDLQSLLNQLISS SSALAVS G                                       SGS
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL---IQISDLQSLLNQLISS-SSALAVSSG---------------------------------------SGS

Query:  ADGTDDWNGSQSGKIV
         DG DDW+GSQS +IV
Subjt:  ADGTDDWNGSQSGKIV

KAA0058547.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]5.26e-8380.11Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDA IQEILFEEKRLGIN +K SDVVLASTY+P  AS+ FCKN KL GHKFI+CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P    T+ K FTKP +SSVVAAT  +S+    QISDLQSLLNQLISSSS ALAVSSGSGS DGTDDW+GSQSGKIV
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]4.00e-7267.98Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDAA+QEILFEEKRLGI S+  SDV LA+T+       +FCKNCKL GHKF NCP IECRYCHK GHILDNCPTRPPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATS----VDSSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV
        PPG S K K   K GSSSVVAA +     + S +Q++DL  LL Q+ISS S+ALAV+ GSG +DGT DW+G++ G I+
Subjt:  PPGTSTKEKTFTKPGSSSVVAATS----VDSSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV

XP_016903357.1 PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo]6.60e-8577.84Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHR+PLPSLDAAIQEILFEEKRLGIN +K SDVVLA+TY+P  AS+ FCKNCKL GHKFI+CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P   S + K FTKP +SSV+AATS + +    QISDLQSLLN LISSSS ALAVS  SG ADGTDDW+GSQSGKIV
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

XP_031740126.1 uncharacterized protein LOC116403359 [Cucumis sativus]4.93e-7994.53Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRA+NMFCKNCKL GHKF NCPKIECRYCHKHGHILDNCPTRPPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSS
        PP TSTKEK FTK GSSSVVAATS DSS
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSS

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882001.94e-7267.98Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDAA+QEILFEEKRLGI S+  SDV LA+T+       +FCKNCKL GHKF NCP IECRYCHK GHILDNCPTRPPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATS----VDSSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV
        PPG S K K   K GSSSVVAA +     + S +Q++DL  LL Q+ISS S+ALAV+ GSG +DGT DW+G++ G I+
Subjt:  PPGTSTKEKTFTKPGSSSVVAATS----VDSSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV

A0A1S4E559 uncharacterized protein LOC1079921403.20e-8577.84Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHR+PLPSLDAAIQEILFEEKRLGIN +K SDVVLA+TY+P  AS+ FCKNCKL GHKFI+CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P   S + K FTKP +SSV+AATS + +    QISDLQSLLN LISSSS ALAVS  SG ADGTDDW+GSQSGKIV
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

A0A5A7SKE1 Zinc finger, CCHC-type2.13e-7362.04Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHR+PLPSLDA IQEILFEE+RL IN +K SD VLASTY+P  AS+ FCKNCKL GHKFINCPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL---IQISDLQSLLNQLISS-SSALAVSSG---------------------------------------SGS
        P   ST+ K FTKP +SSV A  ++D+S     QISDLQSLLNQLISS SSALAVS G                                       SGS
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL---IQISDLQSLLNQLISS-SSALAVSSG---------------------------------------SGS

Query:  ADGTDDWNGSQSGKIV
         DG DDW+GSQS +IV
Subjt:  ADGTDDWNGSQSGKIV

A0A5A7UUZ4 Zinc finger, CCHC-type2.55e-8380.11Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDA IQEILFEEKRLGIN +K SDVVLASTY+P  AS+ FCKN KL GHKFI+CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P    T+ K FTKP +SSVVAAT  +S+    QISDLQSLLNQLISSSS ALAVSSGSGS DGTDDW+GSQSGKIV
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

A0A5D3DCR3 Zinc finger, CCHC-type5.36e-7278.85Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESV+AALLHR+PLPSLDAAIQEILFEEKRLGIN +K SDVVLASTY+P  AS+ FCKNCKL GHKFI+CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPGTSTKEKTFTKPGSSSVVAATSVDSSLIQ--ISDLQSLLNQLISSSS-ALAVSS
        P   ST  K FTKP +SSVVAAT  + +  Q  ISDLQSLLNQLISSSS ALAVSS
Subjt:  PPGTSTKEKTFTKPGSSSVVAATSVDSSLIQ--ISDLQSLLNQLISSSS-ALAVSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTACGCCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCTTTAGATGCAGCTATTCAAGAAATTTTGTTTGAAGAAAAGCGTCT
TGGCATCAATTCTACTAAACAATCTGATGTTGTCCTTGCCAGCACATACACTCCCAACAGAGCCTCAAATATGTTTTGTAAGAATTGTAAGCTCTTTGGTCACAAATTTA
TTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGTCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAACT
TTTACTAAACCTGGTTCCTCATCTGTTGTTGCTGCAACCTCGGTTGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTC
TGCCCTTGCTGTCTCATCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTACGCCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCTTTAGATGCAGCTATTCAAGAAATTTTGTTTGAAGAAAAGCGTCT
TGGCATCAATTCTACTAAACAATCTGATGTTGTCCTTGCCAGCACATACACTCCCAACAGAGCCTCAAATATGTTTTGTAAGAATTGTAAGCTCTTTGGTCACAAATTTA
TTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGTCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAACT
TTTACTAAACCTGGTTCCTCATCTGTTGTTGCTGCAACCTCGGTTGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTC
TGCCCTTGCTGTCTCATCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGA
Protein sequenceShow/hide protein sequence
MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRASNMFCKNCKLFGHKFINCPKIECRYCHKHGHILDNCPTRPPRPPGTSTKEKT
FTKPGSSSVVAATSVDSSLIQISDLQSLLNQLISSSSALAVSSGSGSADGTDDWNGSQSGKIV