CuGenDBv2

Gene ID	Cucsat.G16677
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	ctg24:2622640..2628227
RNA-Seq Expression	Cucsat.G16677
Synteny	Cucsat.G16677
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

4.42e-302

96.01

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Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP                VIL
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL

Query:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
        AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+Q
Subjt:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ

Query:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

2.51e-294

94.01

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Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP                VIL
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL

Query:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
        AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
Subjt:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ

Query:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        Q+SEGVTPGEDVYIILRLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

1.17e-275

87.86

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Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPTS  QR F +SIL CSSTSQSPE N++SAES VN GLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKV
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRP                V
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKV

Query:  ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR
        ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIR
Subjt:  ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR

Query:  DQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        DQQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  DQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_023528576.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

1.17e-275

87.86

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Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPTS  QR F +SIL CSSTSQSPEAN++SAES VN GLQLFSKGRVKEALVQFEAAL+M+PNP+EAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKV
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRP                V
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKV

Query:  ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR
        ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIR
Subjt:  ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR

Query:  DQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        DQQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  DQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

3.33e-283

91.13

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Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHL T S+PKS TILRPRL TSQR F +SIL  SSTSQSPEANL+SAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FF VALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRP                VIL
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL

Query:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
        AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP T AAA LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQ
Subjt:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ

Query:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        Q+SE VTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

2.14e-302

96.01

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP                VIL
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL

Query:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
        AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+Q
Subjt:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ

Query:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.22e-294

94.01

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP                VIL
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL

Query:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
        AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
Subjt:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ

Query:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        Q+SEGVTPGEDVYIILRLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

1.22e-294

94.01

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Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP                VIL
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVIL

Query:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
        AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ
Subjt:  AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ

Query:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        Q+SEGVTPGEDVYIILRLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  QESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

2.22e-275

87.47

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS----QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + F LSI  CSSTSQSPEAN+++AESCVN GLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA 
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS----QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL

Query:  YNKACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISL

Query:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVAS
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP               
Subjt:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVAS

Query:  KVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESW
         VILAGKKETVSSAIQKAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAPT A A  LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESW
Subjt:  KVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESW

Query:  IRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        IRDQQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  IRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

5.66e-276

87.86

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Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPTS  QR F +SIL CSSTSQSPE N++SAES VN GLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKV
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRP                V
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKV

Query:  ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR
        ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIR
Subjt:  ILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR

Query:  DQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        DQQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  DQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

3.8e-169

67.45

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Query:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLP-------TSQRTFRLSILSCSSTSQSPEANLQS---------AESCVNFGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S +   RP LP        S+R +   +   +S+S SP ++  S         AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLP-------TSQRTFRLSILSCSSTSQSPEANLQS---------AESCVNFGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+Y LKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        KFFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  LSFMLVLLASVTVASKVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEI
                        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +LPSIGEDF+ RAQS+ A+SKLK EI
Subjt:  LSFMLVLLASVTVASKVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEI

Query:  RFRAEVISPAEWESWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  RFRAEVISPAEWESWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

2.7e-170

67.45

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Query:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLP-------TSQRTFRLSILSCSSTSQSPEANLQS---------AESCVNFGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S +   RP LP        S+R +   +   +S+S SP ++  S         AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLP-------TSQRTFRLSILSCSSTSQSPEANLQS---------AESCVNFGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+Y LKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        KFFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  LSFMLVLLASVTVASKVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEI
                        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +LPSIGEDF+ RAQS+ A+SKLK EI
Subjt:  LSFMLVLLASVTVASKVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEI

Query:  RFRAEVISPAEWESWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  RFRAEVISPAEWESWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

2.7e-29

29.82

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Query:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V++G   +F  L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPLSFMLVLLASVTVASKVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDF
          N+++ +  LR                 VA  VI AG  E +  A ++++ +   L+ RGV++V     +G  P +E   F     A         E+ 
Subjt:  STNRIVELVQLRDTVRPLSFMLVLLASVTVASKVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDF

Query:  EKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL
         +R + +           +R   +   EWE W+ +Q++   V+    VY+ LRLDGRVR SG G P WQ  + +LPP++ + + L
Subjt:  EKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL

Sequences

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CDS sequence

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ATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTCCCCACCCTTTCAAACCCCAAATCACTCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCGTCT
CTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATTTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAG
AAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAG
AAAGCCGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAAACTGAAATTTGGCACGATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGA
ATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTACAAGCACCTTTTCGTGGGGTTCGGAAGTTCT
TTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCT
GGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACGTT
ATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGTTATCGTTCATGCTGGTTCTTCTTGCTTCTGTAACAG
TTGCAAGTAAGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCT
GTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTCCAACCACCGCTGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACG
AGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGGAATCCG
AAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCTGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAATTACCA
CCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGA

mRNA sequence

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Protein sequence

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MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGK
KAADCLRVALREYKLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETA
GNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPLSFMLVLLASVTVASKVILAGKKETVSSAIQKAERFRTELLRRGVLLVP
VIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELP
PMEALLSKLEK

Cucsat.G16677 (gene) of Cucumber (B10) v3 genome