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Cucsat.G16709 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G16709
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationctg24:2661352..2663193
RNA-Seq ExpressionCucsat.G16709
SyntenyCucsat.G16709
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058547.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]1.49e-8279.55Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDA IQEILFEEKRLGIN +K SDVVLASTY+P  A++ FCKN KL+GHKF +CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P S  T+ K FTK  +SSVVAAT D+S+    QISDLQSLLNQLISSSS ALAVSSGSGS DGTDDW+GSQSGKIV
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]5.66e-7269.1Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDAA+QEILFEEKRLGI S+  SDV LA+T+       +FCKNCKL GHKF+NCP IECRYCHK GHILDNCPTRPPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAA-TSDD---SSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV
        PP  S K K   K GSSSVVAA TS D    S +Q++DL  LL Q+ISS S+ALAV+ GSG +DGT DW+G++ G I+
Subjt:  PPSTSTKEKIFTKHGSSSVVAA-TSDD---SSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV

XP_016903357.1 PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo]1.09e-8377.27Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHR+PLPSLDAAIQEILFEEKRLGIN +K SDVVLA+TY+P  A++ FCKNCKL GHKF +CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P S S + K FTK  +SSV+AATSD+ +    QISDLQSLLN LISSSS ALAVS  SG ADGTDDW+GSQSGKIV
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

XP_031740126.1 uncharacterized protein LOC116403359 [Cucumis sativus]7.32e-86100Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSS
        PPSTSTKEKIFTKHGSSSVVAATSDDSS
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSS

XP_031745067.1 uncharacterized protein LOC116405245 [Cucumis sativus]1.34e-7485.91Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDAAIQEIL                    TYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSSLIQISDLQSLLNQLISSSSAL
        PP TSTKEKIFTKHGSSSVVAATSDDSSLIQISDLQSLLNQLISSSSAL
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSSLIQISDLQSLLNQLISSSSAL

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882002.74e-7269.1Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDAA+QEILFEEKRLGI S+  SDV LA+T+       +FCKNCKL GHKF+NCP IECRYCHK GHILDNCPTRPPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAA-TSDD---SSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV
        PP  S K K   K GSSSVVAA TS D    S +Q++DL  LL Q+ISS S+ALAV+ GSG +DGT DW+G++ G I+
Subjt:  PPSTSTKEKIFTKHGSSSVVAA-TSDD---SSLIQISDLQSLLNQLISS-SSALAVSSGSGSADGTDDWNGSQSGKIV

A0A1S4E559 uncharacterized protein LOC1079921405.28e-8477.27Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHR+PLPSLDAAIQEILFEEKRLGIN +K SDVVLA+TY+P  A++ FCKNCKL GHKF +CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P S S + K FTK  +SSV+AATSD+ +    QISDLQSLLN LISSSS ALAVS  SG ADGTDDW+GSQSGKIV
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

A0A5A7SKE1 Zinc finger, CCHC-type4.96e-7260.47Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHR+PLPSLDA IQEILFEE+RL IN +K SD VLASTY+P  A++ FCKNCKL+GHKF NCPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISS-SSALAVSSG---------------------------------------SGSA
        P + ST+ K FTK  +SSV     D+S+    QISDLQSLLNQLISS SSALAVS G                                       SGS 
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISS-SSALAVSSG---------------------------------------SGSA

Query:  DGTDDWNGSQSGKIV
        DG DDW+GSQS +IV
Subjt:  DGTDDWNGSQSGKIV

A0A5A7UUZ4 Zinc finger, CCHC-type7.23e-8379.55Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESVRAALLHRNPLPSLDA IQEILFEEKRLGIN +K SDVVLASTY+P  A++ FCKN KL+GHKF +CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV
        P S  T+ K FTK  +SSVVAAT D+S+    QISDLQSLLNQLISSSS ALAVSSGSGS DGTDDW+GSQSGKIV
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSSL--IQISDLQSLLNQLISSSS-ALAVSSGSGSADGTDDWNGSQSGKIV

A0A5D3DCR3 Zinc finger, CCHC-type1.53e-7178.21Show/hide
Query:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR
        MGLRPEYESV+AALLHR+PLPSLDAAIQEILFEEKRLGIN +K SDVVLASTY+P  A++ FCKNCKL+GHKF +CPKIECRYCHK GHILDNCP +PPR
Subjt:  MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPR

Query:  PPSTSTKEKIFTKHGSSSVVAATSDDSSLIQ--ISDLQSLLNQLISSSS-ALAVSS
        P S ST  K FTK  +SSVVAAT D+ +  Q  ISDLQSLLNQLISSSS ALAVSS
Subjt:  PPSTSTKEKIFTKHGSSSVVAATSDDSSLIQ--ISDLQSLLNQLISSSS-ALAVSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTACGTCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCATTAGATGCAGCTATTCAAGAAATTCTGTTTGAAGAAAAGCGTCT
TGGCATCAACTCTACTAAACAATCTGATGTTGTCCTTGCTAGCACATACACTCCCAACAGAGCCGCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTA
GTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGCCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTAGCACTTCCACAAAAGAGAAAATT
TTTACCAAACATGGTTCCTCATCTGTTGTTGCTGCGACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTC
CGCTCTGGCTGTTTCATCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTACGTCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCATTAGATGCAGCTATTCAAGAAATTCTGTTTGAAGAAAAGCGTCT
TGGCATCAACTCTACTAAACAATCTGATGTTGTCCTTGCTAGCACATACACTCCCAACAGAGCCGCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTA
GTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGCCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTAGCACTTCCACAAAAGAGAAAATT
TTTACCAAACATGGTTCCTCATCTGTTGTTGCTGCGACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTC
CGCTCTGGCTGTTTCATCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGA
Protein sequenceShow/hide protein sequence
MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPNRAANMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPRPPSTSTKEKI
FTKHGSSSVVAATSDDSSLIQISDLQSLLNQLISSSSALAVSSGSGSADGTDDWNGSQSGKIV