CuGenDBv2

Gene ID	Cucsat.G16897
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Zinc finger SWIM domain-containing protein
Genome location	ctg24:2710194..2712544
RNA-Seq Expression	Cucsat.G16897
Synteny	Cucsat.G16897
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0097196 - Shu complex (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152266.1 zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sativus]

8.50e-88

100

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_008454376.1 PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]

1.16e-85

97.73

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_022942858.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata]

2.16e-81

93.94

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]

3.07e-81

93.18

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_038903696.1 zinc finger SWIM domain-containing protein 7 [Benincasa hispida]

1.59e-83

95.45

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISG PSTRSIFQV+GESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLA S+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWG5 SWIM-type domain-containing protein

4.11e-88

100

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A1S3BZP2 zinc finger SWIM domain-containing protein 7

5.62e-86

97.73

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1D5Z4 zinc finger SWIM domain-containing protein 7

1.37e-77

89.39

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQI+STR VTDDQLS+LHFLFGKNFERATRIVDQRGVKKI G PS RSIFQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GA IE KVSDEELA+LLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X2

1.05e-81

93.94

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X2

1.49e-81

93.18

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G33925.1 unknown protein

7.7e-49

66.67

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLA+S+G   E++VSD+ LA++LS +
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

AT4G33925.2 unknown protein

1.2e-44

68.07

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Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLA+S+G   E++
Subjt:  KHQLAARLAASVGACIEVK

Sequences

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CDS sequence

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ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTTTGGCAAGAACTT
CGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGT
ATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCT
TCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

mRNA sequence

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Protein sequence

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MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAA
SVGACIEVKVSDEELAILLSNL

Cucsat.G16897 (gene) of Cucumber (B10) v3 genome