CuGenDBv2

Gene ID	Cucsat.G16912
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Tubulin alpha chain
Genome location	ctg24:2934571..2937638
RNA-Seq Expression	Cucsat.G16912
Synteny	Cucsat.G16912
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

1.05e-119

82.88

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSL----LLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS
        MA LQILKS++S PSIS   FGSQS+RF S+ DS     LLHGRRRSLRY CV RR +FRCAA+D+DKE+NGEEPPESLFMKELKKRGITPTSLLEDT++
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSL----LLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS

Query:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP
        +DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFFLG SF+HDG +TPISPP
Subjt:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP

Query:  PYVDPYALLEDERISQIAPPVN
        PYVDPYALLEDERISQ+AP VN
Subjt:  PYVDPYALLEDERISQIAPPVN

XP_004150271.1 uncharacterized protein LOC101221726 [Cucumis sativus]

2.28e-147

100

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE
        MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE

Query:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP
        LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP
Subjt:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP

Query:  YALLEDERISQIAPPVN
        YALLEDERISQIAPPVN
Subjt:  YALLEDERISQIAPPVN

XP_008454422.1 PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo]

3.73e-137

93.55

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE
        MA+LQILKS+LSLPSISH NFGSQSTRF SDFDSLLLHGRRRSLR ACV RRF+FRCAAKD DKE+NGEEPPESLFMKELKKRGITPTSLLEDTN+SDF 
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE

Query:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP
        LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+SFIHDG+TPISPPPYVDP
Subjt:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP

Query:  YALLEDERISQIAPPVN
        YALLEDERISQIAPPVN
Subjt:  YALLEDERISQIAPPVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

5.19e-120

82.88

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS
        MA LQILKS++S PSIS   FGSQS+RF S+ DS    +LLHGRRRSLRY CV RR +FRCAA+D+DKE+NGEEPPESLFMKELKKRGITPTSLLEDT++
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS

Query:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP
        +DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFFLG SF+HDG +TPISPP
Subjt:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP

Query:  PYVDPYALLEDERISQIAPPVN
        PYVDPYALLEDERISQ+AP VN
Subjt:  PYVDPYALLEDERISQIAPPVN

XP_038905067.1 uncharacterized protein LOC120091218 isoform X1 [Benincasa hispida]

1.10e-121

85.14

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS
        MAALQILKS++S PSIS  NFG QS+RF SD DS    +LLHGRRRSLRY CV RR +FRCAA+D DK++NGEEPPESLFMKELKKRGITPTSLLEDTN+
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS

Query:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP
        SDF LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFF LYFF GASF+HDG +T ISPP
Subjt:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP

Query:  PYVDPYALLEDERISQIAPPVN
         YVDPYALLE+ERISQ APPVN
Subjt:  PYVDPYALLEDERISQIAPPVN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KY14 Uncharacterized protein

1.11e-147

100

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE
        MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE

Query:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP
        LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP
Subjt:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP

Query:  YALLEDERISQIAPPVN
        YALLEDERISQIAPPVN
Subjt:  YALLEDERISQIAPPVN

A0A1S3BY38 uncharacterized protein LOC103494832

1.81e-137

93.55

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE
        MA+LQILKS+LSLPSISH NFGSQSTRF SDFDSLLLHGRRRSLR ACV RRF+FRCAAKD DKE+NGEEPPESLFMKELKKRGITPTSLLEDTN+SDF 
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFE

Query:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP
        LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+SFIHDG+TPISPPPYVDP
Subjt:  LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP

Query:  YALLEDERISQIAPPVN
        YALLEDERISQIAPPVN
Subjt:  YALLEDERISQIAPPVN

A0A6J1D5D9 uncharacterized protein LOC111017763

1.90e-117

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS
        MAALQ+LKS++S  SIS  NFG +S+RF+S  DS    +  HGRRRSLRY CV RR +FRCAA+D DKE+NGEEPPESLFMKELKKRG+TPTSLLED+NS
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS

Query:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPP
        +DF LGGEMTGE RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFF G SF+H+G+TPISPPP
Subjt:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPP

Query:  YVDPYALLEDERISQIAPPVN
        YVDPYALLEDERISQ AP VN
Subjt:  YVDPYALLEDERISQIAPPVN

A0A6J1E457 uncharacterized protein LOC111430640

1.45e-119

82.43

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSL----LLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS
        MA LQILKS++S PSIS   FGSQS+RF S+ DS     LLHGRRRSLRY CV RR +FRCAA+D+DKE+NGEEPPESLFMKELKKRGITPTSLLEDT++
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSL----LLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS

Query:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP
        +DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFFLG SF+HDG +TPISPP
Subjt:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP

Query:  PYVDPYALLEDERISQIAPPVN
        PYVDPYALLEDER+SQ+AP VN
Subjt:  PYVDPYALLEDERISQIAPPVN

A0A6J1JBV1 uncharacterized protein LOC111483048

2.51e-120

82.88

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Query:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS
        MA LQILKS++S PSIS   FGSQS+RF S+ DS    +LLHGRRRSLRY CV RR +FRCAA+D+DKE+NGEEPPESLFMKELKKRGITPTSLLEDT++
Subjt:  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNS

Query:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP
        +DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFFLG SF+HDG +TPISPP
Subjt:  SDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPP

Query:  PYVDPYALLEDERISQIAPPVN
        PYVDPYALLEDERISQ+AP VN
Subjt:  PYVDPYALLEDERISQIAPPVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

3.7e-48

63.69

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Query:  DKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFEL-GGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLG
        D ++ GEEPPESLFMKELK+RG+TPTSLL+D      E+  G+ TG +   S+ +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLG
Subjt:  DKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFEL-GGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLG

Query:  FWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPPPYVDPYALLEDERISQIAPPVN
        FWPLI++T+  F  LY + GA FIHDG +TP+SPPPY+DPYALLEDERIS + P +N
Subjt:  FWPLIIITVSFFFGLYFFLGASFIHDG-QTPISPPPYVDPYALLEDERISQIAPPVN

Sequences

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CDS sequence

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ATGGCTGCTCTTCAAATTCTCAAATCATCTCTCTCTCTTCCTTCCATCTCGCACTCGAATTTTGGCTCTCAATCAACACGCTTCGTCTCTGACTTTGATTCCCTACTCCT
TCATGGACGTCGGAGGAGTTTGCGTTATGCCTGCGTTTATAGAAGGTTCACTTTCCGTTGCGCTGCTAAAGATACTGATAAGGAAACCAATGGAGAAGAACCTCCAGAAT
CATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAACAGCAGTGACTTTGAACTTGGTGGCGAGATGACTGGAGAAAACAGA
GATTTCTCCCGTAGAAGTGCTGTTTCAACGGAAGTTAACAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCG
TGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCATCATAACGGTTTCGTTCTTTTTTGGTTTATACTTTTTTTTGGGAGCCTCTT
TTATTCATGATGGCCAAACGCCAATATCTCCTCCACCGTATGTTGACCCATATGCTCTTTTAGAGGACGAAAGAATTTCACAAATAGCTCCTCCTGTAAATTGA

mRNA sequence

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Protein sequence

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MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENR
DFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDPYALLEDERISQIAPPVN

Cucsat.G16912 (gene) of Cucumber (B10) v3 genome