CuGenDBv2

Gene ID	Cucsat.G171
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	RNA polymerase II elongation factor
Genome location	ctg1:3589278..3590631
RNA-Seq Expression	Cucsat.G171
Synteny	Cucsat.G171
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.69e-122

83.72

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Query:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI LL 
Subjt:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG

Query:  FSAIIFVTSKFILCG
        FS I+F  SKFILCG
Subjt:  FSAIIFVTSKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]

1.73e-152

100

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAIIFVTSKFILCGF
        GFSAIIFVTSKFILCGF
Subjt:  GFSAIIFVTSKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

4.57e-148

96.31

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI ISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAIIFVTSKFILCGF
        GFSAI+F  SKFILCGF
Subjt:  GFSAIIFVTSKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

6.94e-124

83.64

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Query:  ETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPI
        ET+DS AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDP 
Subjt:  ETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPI

Query:  VCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGF
        VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI LL F
Subjt:  VCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGF

Query:  SAIIFVTSKFILCG
        S I+F  SKFILCG
Subjt:  SAIIFVTSKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

4.65e-139

92.69

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Query:  MAETKDSTAAHIVEIPVEQENHTQNL--MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS
        MAETKDS  AHIVEIPVEQENHTQN   MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNL--MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS

Query:  SDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQLQ+EKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITI 
Subjt:  SDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LLGFSAIIFVTSKFILCGF
        LLGFSAI+F  SKFILC F
Subjt:  LLGFSAIIFVTSKFILCGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

8.39e-153

100

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAIIFVTSKFILCGF
        GFSAIIFVTSKFILCGF
Subjt:  GFSAIIFVTSKFILCGF

A0A1S3BL81 uncharacterized protein LOC103491049

2.21e-148

96.31

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI ISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAIIFVTSKFILCGF
        GFSAI+F  SKFILCGF
Subjt:  GFSAIIFVTSKFILCGF

A0A5A7VJ68 Uncharacterized protein

1.43e-96

95.95

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Query:  MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEP
        MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEP
Subjt:  MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEP

Query:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF
        QIGNRMKSSSVEIKWGPLTWFSRNFI ISLLGFSAI+F  SKFILCGF
Subjt:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF

A0A6J1EWB5 uncharacterized protein LOC111438709

7.81e-121

83.26

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Query:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLT  SRNF+TI LL 
Subjt:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG

Query:  FSAIIFVTSKFILCG
        FS I+F  SKFILCG
Subjt:  FSAIIFVTSKFILCG

A0A6J1HN07 uncharacterized protein LOC111465114

2.73e-121

83.72

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Query:  ETKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        ETKDS AA HIVEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI LL 
Subjt:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG

Query:  FSAIIFVTSKFILCG
        FS I+F  SKFILCG
Subjt:  FSAIIFVTSKFILCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

3.1e-24

34.74

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Query:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLY-------TSSDPIVCKKWWVPAVVIGATSGVFVIVVQ
        HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  FFFLFH++SL LL+       +S+    CK+ W+P++    +S   +  V+
Subjt:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLY-------TSSDPIVCKKWWVPAVVIGATSGVFVIVVQ

Query:  LKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLLGFSAIIFVTSKFILC
         K  +       L++EK + + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+     S ++    + ILC
Subjt:  LKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLLGFSAIIFVTSKFILC

AT5G56120.1 unknown protein

2.2e-62

54.39

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Query:  MAETKDSTAAHIVEIPVEQEN----HTQNL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLF
        MA TKDS   H+VEIPV++E+      Q L         ++ VIQ HPL +ISES GHLLLLKLWQR+E LF  R+  +E+++ES+K++IFQLCCFF +F
Subjt:  MAETKDSTAAHIVEIPVEQEN----HTQNL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLF

Query:  HALSLTLLYTSS---------DPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS
        H    TL+Y+SS            VCKKWW+P+ V  ATS V V +VQ KL+++WK    + +E+ +NR LTRCV ELRMKGS F+LSKEP  G RMKSS
Subjt:  HALSLTLLYTSS---------DPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS

Query:  SVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF
        SVEIKW P+TWFS+  ITI LL  + + F  SKFILCGF
Subjt:  SVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF

Sequences

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CDS sequence

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GTATCTTCAAAACTCAACAAAATTCCAATTCCAAACTCAAAATCATCGAAGTTCAAATCTCCAATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCC
AGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGC
AAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCC
CTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGGTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCA
GCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCT
TTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTT
CTTGGCTTTTCTGCCATTATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAA

mRNA sequence

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Protein sequence

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VSSKLNKIPIPNSKSSKFKSPMAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHA
LSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
LGFSAIIFVTSKFILCGF

Cucsat.G171 (gene) of Cucumber (B10) v3 genome