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Cucsat.G17291 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G17291
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPhytochrome
Genome locationctg27:2120251..2120671
RNA-Seq ExpressionCucsat.G17291
SyntenyCucsat.G17291
Gene Ontology termsGO:0000160 - phosphorelay signal transduction system (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009584 - detection of visible light (biological process)
GO:0009585 - red, far-red light phototransduction (biological process)
GO:0017006 - protein-tetrapyrrole linkage (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000155 - phosphorelay sensor kinase activity (molecular function)
GO:0009881 - photoreceptor activity (molecular function)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020739.1 Phytochrome A, partial [Cucurbita argyrosperma subsp. argyrosperma]4.49e-4077.14Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGY+KRQIQNPLCGI+FS KML+++QLG EQ QLL+NS +CQRQI KVL +S DLD II+G I+LEMVEFSL+E LVV+ISQVMMKSKGKGIQI NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V EEI
Subjt:  VGEEI

XP_008464788.1 PREDICTED: phytochrome A-like [Cucumis melo]4.22e-5497.14Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGYMKRQIQNPL GIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQG++ELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        VGEEI
Subjt:  VGEEI

XP_022951908.1 phytochrome A-like [Cucurbita moschata]4.49e-4077.14Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGY+KRQIQNPLCGI+FS KML+++QLG EQ QLL+NS +CQRQI KVL +S DLD II+G I+LEMVEFSL+E LVV+ISQVMMKSKGKGIQI NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V EEI
Subjt:  VGEEI

XP_031742642.1 phytochrome A [Cucumis sativus]5.37e-56100Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        VGEEI
Subjt:  VGEEI

XP_038884425.1 phytochrome A-like [Benincasa hispida]7.82e-5497.14Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLL NSVNCQRQISKVLDESHDLDHIIQG+IELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V EEI
Subjt:  VGEEI

TrEMBL top hitse value%identityAlignment
A0A0A0KHC2 Phytochrome2.58e-56100Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        VGEEI
Subjt:  VGEEI

A0A1S3CMF0 Phytochrome2.04e-5497.14Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGYMKRQIQNPL GIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQG++ELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        VGEEI
Subjt:  VGEEI

A0A6J1DYB9 Phytochrome9.51e-3772.12Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGY+KRQIQNPL GIIFSR++L++T+LG+EQKQLL  S++CQ+QISK+LDES DLD II G I+LEMVEF+L EVL V+ISQVM+KSKGKGIQ+ N+
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEE
          EE
Subjt:  VGEE

A0A6J1GJ14 Phytochrome2.17e-4077.14Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGY+KRQIQNPLCGI+FS KML+++QLG EQ QLL+NS +CQRQI KVL +S DLD II+G I+LEMVEFSL+E LVV+ISQVMMKSKGKGIQI NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V EEI
Subjt:  VGEEI

A0A6J1KP52 Phytochrome1.40e-3976.19Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKALGY+KRQIQNPLCGI+FS KML+ +QLG EQ QLL+NS +CQRQI KVL +S DLD II+G I+LEMVEFSL+E LVV+ISQVMMKS+GKGIQI NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V EEI
Subjt:  VGEEI

SwissProt top hitse value%identityAlignment
B4YB07 Phytochrome A-24.8e-3066.67Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        L AL YMKRQI+NPLCGIIFSRKML+ T LG EQKQLL  S  CQ+Q+SK+LD+S DLD II G ++LEM EF+L+EVLV ++SQVM KS GK I+I N+
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V E+I
Subjt:  VGEEI

P06592 Phytochrome A7.3e-3171.15Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        L+ALGY+KRQIQNPL GIIFSR++L++T+LGVEQK+LL  S  CQ+QISKVLDES D+D II G I+LEM EF+L+EVL+V+ISQVM+K KGKGIQI NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEE
          EE
Subjt:  VGEE

P14712 Phytochrome A1.1e-2659.05Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKAL Y+KRQI+NPL GI+F+RKM++ T+LG EQ+++L  S  CQ+Q+SK+LD+S DL+ II+G ++LEM EF+L EVL  + SQVMMKS GK ++I NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
         GEE+
Subjt:  VGEEI

P30733 Phytochrome A2.9e-2760.95Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LK L Y++RQI+NPL GIIFSRKML+ T LG EQK +L  S  CQRQ+ K+LD++ DLD II+G ++LEM+EF L+EVLV +ISQVMMKS GK I I N+
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        + E++
Subjt:  VGEEI

P42500 Phytochrome A9.0e-2964.76Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        L AL YMKRQI+NPLCGI+FSRKML+ T LG EQKQLL  S  CQ+Q+SK+LD+S DLD II G ++LEM EF+L+EVLV ++SQVM KS GK I+I N+
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V   I
Subjt:  VGEEI

Arabidopsis top hitse value%identityAlignment
AT1G09570.1 phytochrome A7.8e-2859.05Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKAL Y+KRQI+NPL GI+F+RKM++ T+LG EQ+++L  S  CQ+Q+SK+LD+S DL+ II+G ++LEM EF+L EVL  + SQVMMKS GK ++I NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
         GEE+
Subjt:  VGEEI

AT1G09570.2 phytochrome A7.8e-2859.05Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        LKAL Y+KRQI+NPL GI+F+RKM++ T+LG EQ+++L  S  CQ+Q+SK+LD+S DL+ II+G ++LEM EF+L EVL  + SQVMMKS GK ++I NE
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
         GEE+
Subjt:  VGEEI

AT2G18790.1 phytochrome B2.7e-1238.46Show/hide
Query:  KALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEV
        K L Y+ + I+NPL G+ F+  +L+ T L  +QKQLL  SV+C++QIS+++ +  DL+ I  G   L+  EF L  V+   +SQ M   + +G+Q+  ++
Subjt:  KALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEV

Query:  GEEI
         EEI
Subjt:  GEEI

AT4G16250.1 phytochrome D1.9e-1035.58Show/hide
Query:  KALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEV
        K L Y+ + I+NPL G+ F+  +L+   L  +QKQLL  SV+C++QISK++ +  D+  I  G   LE  EF +  V    +SQVM+  + + +Q+   +
Subjt:  KALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEV

Query:  GEEI
          E+
Subjt:  GEEI

AT4G18130.1 phytochrome E5.4e-1340Show/hide
Query:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE
        L  L Y++++I+NPL GI F+ K+L+ +++   Q+Q L  S  C++QI+ ++ ES DL  I +G ++LE  EF L  +L   ISQVM+  + +  Q+  E
Subjt:  LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENE

Query:  VGEEI
        V EEI
Subjt:  VGEEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAAGGCATTGGGATATATGAAGAGGCAGATTCAAAATCCACTGTGCGGGATTATTTTTTCAAGGAAAATGTTGCAACAAACTCAGTTGGGAGTGGAACAGAAGCAACT
TTTGATTAATAGTGTTAATTGTCAAAGGCAAATCTCCAAGGTTCTTGACGAGTCTCATGATCTTGATCATATTATTCAAGGAGTGATTGAATTAGAAATGGTTGAGTTTT
CATTATATGAAGTATTGGTAGTAGCAATAAGTCAAGTGATGATGAAGAGCAAAGGAAAAGGCATTCAAATAGAAAATGAAGTTGGAGAAGAGATA
mRNA sequenceShow/hide mRNA sequence
TTGAAGGCATTGGGATATATGAAGAGGCAGATTCAAAATCCACTGTGCGGGATTATTTTTTCAAGGAAAATGTTGCAACAAACTCAGTTGGGAGTGGAACAGAAGCAACT
TTTGATTAATAGTGTTAATTGTCAAAGGCAAATCTCCAAGGTTCTTGACGAGTCTCATGATCTTGATCATATTATTCAAGGAGTGATTGAATTAGAAATGGTTGAGTTTT
CATTATATGAAGTATTGGTAGTAGCAATAAGTCAAGTGATGATGAAGAGCAAAGGAAAAGGCATTCAAATAGAAAATGAAGTTGGAGAAGAGATA
Protein sequenceShow/hide protein sequence
LKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVGEEI