CuGenDBv2

Gene ID	Cucsat.G17399
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	chloroplast stem-loop binding protein of 41 kDa
Genome location	ctg27:1521749..1522996
RNA-Seq Expression	Cucsat.G17399
Synteny	Cucsat.G17399
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005829 - cytosol (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR001509 - NAD-dependent epimerase/dehydratase IPR036291 - NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140080.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis sativus]

5.53e-288

99.51

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
        MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSS  RPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG

Query:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
        FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY

Query:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
        KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Subjt:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN

Query:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
        IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
Subjt:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI

Query:  LESLNVPVAA
        LESLNVPVAA
Subjt:  LESLNVPVAA

XP_008449375.1 PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis melo]

4.22e-271

94.88

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
        MAALPFSSSLFSSKPSIYFPS ISPSF   SLSPISNSSPISSSFSISHSNFLSNYSS   SSSS RPSTV SFSVRASSS KKKVLIVNTNSGGHAVIG
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG

Query:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
        FYFAK+LLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKV+EGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY

Query:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
        K TDEPPHVEGD VKADAGHVGVEKY+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Subjt:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN

Query:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
        IFNCV+ RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW+ TTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
Subjt:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI

Query:  LESLNVPVAA
        LESL VPVAA
Subjt:  LESLNVPVAA

XP_022963688.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata]

8.62e-247

87.59

Show/hide

Query:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI
        MAAL  SSS LF+SKPSI+ PSS+SP     SLSPIS+SS ++SSF+ISHS        F    SSSR S V SFSVRASS+ KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI

Query:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAKQLLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVS GGKTVWGDPAE+GKVV GASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK TDEPPHVEGD VKADAGHVGVE+YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+
Subjt:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK
        NIFNCVS RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW+ +TNLPEDLKERFEEYVKIGRDKKAIKFELDDK
Subjt:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK

Query:  ILESLNVPVAA
        ILESL VPVAA
Subjt:  ILESLNVPVAA

XP_022967430.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima]

2.87e-245

87.1

Show/hide

Query:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI
        MAAL  SSS LF+SKPSI+ PSS+SP     S+SPIS+ S ++SSF+ISHS        F    SSSR S V SFSVRASS+ KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI

Query:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAKQLLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVS GGKTVWGDPAE+GKVV GASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK TDEPPHVEGD VKADAGHVGVE+YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAH+
Subjt:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK
        NIFNCVS RAVTLDGMAKLCAQAAGRPVNIVHYDPK VGVDAKKAFPFRNMHFYAEPRAAQEILGW+ +TNLPEDLKERFEEYVKIGRDKKAIKFELDDK
Subjt:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK

Query:  ILESLNVPVAA
        ILESL VPVAA
Subjt:  ILESLNVPVAA

XP_038888331.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida]

7.88e-254

89.76

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
        MAAL  SSSLFSSKPSI+ PSS+SPSFP  SLSPIS+ SP+SSS SISHS FLS Y SF       RPS V SFSVRA+S  KKKVLIVNTNSGGHAVIG
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG

Query:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
        FYFAKQLLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVSGGGKTVWGDPAEIGKVV GASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY

Query:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
        K TDEPPHVEGD VKADAGHVGVEKYIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVR+RP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Subjt:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN

Query:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
        IFNCVS RAVTLDGMAKLCAQAAGRPV+IVH+DPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGW+GTTNLPEDLKERFEEYVKIGRDKK IKFELDDKI
Subjt:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI

Query:  LESLNVPVAA
        LESL VPVAA
Subjt:  LESLNVPVAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE82 Epimerase domain-containing protein

2.68e-288

99.51

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
        MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSS  RPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG

Query:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
        FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY

Query:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
        KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Subjt:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN

Query:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
        IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
Subjt:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI

Query:  LESLNVPVAA
        LESLNVPVAA
Subjt:  LESLNVPVAA

A0A1S3BLW3 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

2.05e-271

94.88

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
        MAALPFSSSLFSSKPSIYFPS ISPSF   SLSPISNSSPISSSFSISHSNFLSNYSS   SSSS RPSTV SFSVRASSS KKKVLIVNTNSGGHAVIG
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG

Query:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
        FYFAK+LLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKV+EGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY

Query:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
        K TDEPPHVEGD VKADAGHVGVEKY+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Subjt:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN

Query:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
        IFNCV+ RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW+ TTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
Subjt:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI

Query:  LESLNVPVAA
        LESL VPVAA
Subjt:  LESLNVPVAA

A0A5D3E2H3 Chloroplast stem-loop binding protein of 41 kDa a

2.05e-271

94.88

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG
        MAALPFSSSLFSSKPSIYFPS ISPSF   SLSPISNSSPISSSFSISHSNFLSNYSS   SSSS RPSTV SFSVRASSS KKKVLIVNTNSGGHAVIG
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIG

Query:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
        FYFAK+LLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKV+EGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY
Subjt:  FYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIY

Query:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
        K TDEPPHVEGD VKADAGHVGVEKY+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Subjt:  KTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN

Query:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
        IFNCV+ RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW+ TTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI
Subjt:  IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKI

Query:  LESLNVPVAA
        LESL VPVAA
Subjt:  LESLNVPVAA

A0A6J1HIM8 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

4.17e-247

87.59

Show/hide

Query:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI
        MAAL  SSS LF+SKPSI+ PSS+SP     SLSPIS+SS ++SSF+ISHS        F    SSSR S V SFSVRASS+ KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI

Query:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAKQLLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVS GGKTVWGDPAE+GKVV GASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK TDEPPHVEGD VKADAGHVGVE+YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+
Subjt:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK
        NIFNCVS RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW+ +TNLPEDLKERFEEYVKIGRDKKAIKFELDDK
Subjt:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK

Query:  ILESLNVPVAA
        ILESL VPVAA
Subjt:  ILESLNVPVAA

A0A6J1HUG4 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

1.39e-245

87.1

Show/hide

Query:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI
        MAAL  SSS LF+SKPSI+ PSS+SP     S+SPIS+ S ++SSF+ISHS        F    SSSR S V SFSVRASS+ KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVI

Query:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAKQLLGSGHEVTILTVGE+SSDKM KPPFNRFSEIVS GGKTVWGDPAE+GKVV GASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK TDEPPHVEGD VKADAGHVGVE+YIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAH+
Subjt:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK
        NIFNCVS RAVTLDGMAKLCAQAAGRPVNIVHYDPK VGVDAKKAFPFRNMHFYAEPRAAQEILGW+ +TNLPEDLKERFEEYVKIGRDKKAIKFELDDK
Subjt:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK

Query:  ILESLNVPVAA
        ILESL VPVAA
Subjt:  ILESLNVPVAA

SwissProt top hits

e value

%identity

Alignment

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

9.8e-164

74.45

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASS-SPKKKVLIVNTNSGGHAVI
        MAAL  SS  FSSK +    S IS     PSL   S  S  SSSFS   S+  S+ S  + S  +SR  +   F+V+ASS   KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASS-SPKKKVLIVNTNSGGHAVI

Query:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAK+LL +GH VTILTVG++SS+KM KPPFNRFSEIVSGGGKTVWG+PA +  VV G +FDVVLDNNGKD+DTVRPV+DWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK+T++PPHVEGD VKADAGHV VEKY+AE F +WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  
Subjt:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK
        NIFNCVS RAVTLDGMAKLCA AAG+ V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+++LGWE  TNLPEDLKERFEEYVKIGRDKK IKFELDDK
Subjt:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK

Query:  ILESLNVPVAA
        ILE+L  PVAA
Subjt:  ILESLNVPVAA

Q9SA52 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

1.8e-48

36.45

Show/hide

Query:  SSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEQSSDKM----NKPPFNRF-SEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDI
        S+S +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K     +   F  F S+I+   G     D  +     EG  FDVV D NG++ 
Subjt:  SSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEQSSDKM----NKPPFNRF-SEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDI

Query:  DTVRPVIDWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVG---VEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGS
        + V P+++      ++Q+++ SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P S
Subjt:  DTVRPVIDWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVG---VEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGS

Query:  GMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTT
        G+Q++ + HV+DL++   L V   ++A   IFN    + VT DG+AK CA+A G P   IVHY+PK      KKAFPFR+ HF+A    A+ +LGW+   
Subjt:  GMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTT

Query:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL
        +L E L + +      G  +K   F  DD IL
Subjt:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G09340.1 chloroplast RNA binding

1.3e-49

36.45

Show/hide

Query:  SSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEQSSDKM----NKPPFNRF-SEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDI
        S+S +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K     +   F  F S+I+   G     D  +     EG  FDVV D NG++ 
Subjt:  SSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEQSSDKM----NKPPFNRF-SEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDI

Query:  DTVRPVIDWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVG---VEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGS
        + V P+++      ++Q+++ SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P S
Subjt:  DTVRPVIDWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVG---VEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGS

Query:  GMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTT
        G+Q++ + HV+DL++   L V   ++A   IFN    + VT DG+AK CA+A G P   IVHY+PK      KKAFPFR+ HF+A    A+ +LGW+   
Subjt:  GMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTT

Query:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL
        +L E L + +      G  +K   F  DD IL
Subjt:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa

7.0e-165

74.45

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASS-SPKKKVLIVNTNSGGHAVI
        MAAL  SS  FSSK +    S IS     PSL   S  S  SSSFS   S+  S+ S  + S  +SR  +   F+V+ASS   KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASS-SPKKKVLIVNTNSGGHAVI

Query:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAK+LL +GH VTILTVG++SS+KM KPPFNRFSEIVSGGGKTVWG+PA +  VV G +FDVVLDNNGKD+DTVRPV+DWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK+T++PPHVEGD VKADAGHV VEKY+AE F +WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  
Subjt:  YKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK
        NIFNCVS RAVTLDGMAKLCA AAG+ V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+++LGWE  TNLPEDLKERFEEYVKIGRDKK IKFELDDK
Subjt:  NIFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDK

Query:  ILESLNVPVAA
        ILE+L  PVAA
Subjt:  ILESLNVPVAA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGCTCTTCCTTTCTCATCTTCCCTTTTCTCTTCCAAGCCTTCCATCTATTTCCCATCTTCCATTTCTCCTTCTTTTCCTCATCCTTCACTTTCTCCAATCTCTAA
CTCTTCTCCTATTTCATCTTCTTTCTCCATTTCCCATTCTAATTTTCTCTCTAATTACTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTAGACCCTCCACTGTCTTTTCCT
TTAGCGTTAGGGCTAGCTCTTCTCCCAAGAAGAAGGTGTTGATTGTCAACACAAACAGCGGTGGGCATGCTGTCATTGGCTTCTATTTTGCTAAACAGCTTCTGGGTTCT
GGCCATGAAGTCACGATTCTCACTGTCGGTGAACAGAGTTCTGATAAGATGAACAAACCCCCTTTCAACAGATTCTCTGAAATTGTGAGTGGTGGAGGCAAGACCGTATG
GGGAGATCCAGCAGAAATTGGGAAGGTTGTGGAAGGAGCATCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATACTGTGAGGCCTGTTATTGATTGGGCAA
AGAGCTCTGGTGTGAAGCAGTTTCTGTTTATCAGCAGTGCTGGAATTTATAAGACAACTGATGAGCCTCCCCATGTTGAAGGGGATCCTGTTAAAGCTGACGCTGGTCAT
GTTGGTGTTGAGAAATATATTGCAGAGGTTTTCAGCAGCTGGGCTGTCTTCCGTCCACAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGA
CAGAATTGTCCGGGACAGACCGATTCCAATACCAGGCTCTGGTATGCAGCTGACAAACATTGCACATGTCAGGGACTTGTCTTCCATGTTAACACTAGCTGTAGAGAAGC
CGGATGAAGCACACTCTAACATATTCAACTGTGTAAGCGGTCGGGCTGTGACTCTTGATGGAATGGCCAAGCTGTGTGCTCAAGCAGCAGGTCGTCCTGTTAACATAGTG
CATTATGATCCAAAAGCAGTTGGGGTTGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCAGAACCAAGAGCAGCCCAGGAGATTTTAGGGTGGGAAGG
TACCACAAATCTTCCTGAAGATTTGAAGGAACGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAAGCTATTAAGTTTGAATTAGATGATAAGATACTTGAGTCCT
TAAACGTTCCAGTAGCTGCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFSSSSSSSRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGS
GHEVTILTVGEQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGH
VGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTLDGMAKLCAQAAGRPVNIV
HYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLNVPVAA

Cucsat.G17399 (gene) of Cucumber (B10) v3 genome