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Cucsat.G17429 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G17429
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationctg27:2064867..2069428
RNA-Seq ExpressionCucsat.G17429
SyntenyCucsat.G17429
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]1.22e-24100Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]2.44e-2192.59Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIHNILNDEKL+KFILAIDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
XP_008464781.1 PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]1.41e-2192.59Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIHNILNDEKL+KFILAIDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
XP_031743374.1 uncharacterized protein LOC101208978 isoform X3 [Cucumis sativus]1.61e-24100Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
XP_038886971.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida]6.66e-1883.33Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIH+ LN E+LQK ILAIDSSPDPETE+DKAMEDEAF IFS+KISSII S
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein5.92e-25100Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X11.18e-2192.59Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIHNILNDEKL+KFILAIDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
A0A1S3CNV6 uncharacterized protein LOC103502587 isoform X26.80e-2292.59Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEIHNILNDEKL+KFILAIDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
A0A6J1DVQ5 uncharacterized protein LOC111024491 isoform X24.65e-1883.33Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEI N LNDE LQK I AI SSPDPETE+D+AMEDEAFRIFSSKISSII S
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X18.79e-1883.33Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        ASSSEI N LNDE LQK I AI SSPDPETE+D+AMEDEAFRIFSSKISSII S
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.6e-0758.49Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN
        ASSSEI   L DE LQK I +IDSS +P  E+D+AM  EAFR F+ KI S I+
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN
AT4G28820.2 HIT-type Zinc finger family protein1.6e-0758.49Show/hide
Query:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN
        ASSSEI   L DE LQK I +IDSS +P  E+D+AM  EAFR F+ KI S I+
Subjt:  ASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATATTTGGTCCCAAAAAACACTTGACATGCATTTCTAATTCTTACAAGAGTCAGACGAATTTCAAGGGTTATGTGAGACAGAAATCTTCAAAATCTCATGGTTG
CAAAATGTTTACTAGATTAGATCATATGAAAAATCTAGTATATAACAACCTTCTCTCGGACATTTGTTTGGTTAACGTTCTGAAGCTTTGGATAGGAAAATATCATTTGA
GAAGGGATCAAGTTTGGAAGGTTGGACGTGACAATTTGTATGTCAAGGCGAAACTAGGAATGGAAACTATGTTTTATCACATTTTTATTTACGCATCAAGAATAATTTTG
TTGCTAGTTGTAAAAGCATTATTGAACTTACAATCTAGGTTTCTACGCATCTTTCTTACAGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAA
GTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAACT
CTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCATATTTGGTCCCAAAAAACACTTGACATGCATTTCTAATTCTTACAAGAGTCAGACGAATTTCAAGGGTTATGTGAGACAGAAATCTTCAAAATCTCATGGTTG
CAAAATGTTTACTAGATTAGATCATATGAAAAATCTAGTATATAACAACCTTCTCTCGGACATTTGTTTGGTTAACGTTCTGAAGCTTTGGATAGGAAAATATCATTTGA
GAAGGGATCAAGTTTGGAAGGTTGGACGTGACAATTTGTATGTCAAGGCGAAACTAGGAATGGAAACTATGTTTTATCACATTTTTATTTACGCATCAAGAATAATTTTG
TTGCTAGTTGTAAAAGCATTATTGAACTTACAATCTAGGTTTCTACGCATCTTTCTTACAGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAA
GTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAACT
CTTAG
Protein sequenceShow/hide protein sequence
MIIFGPKKHLTCISNSYKSQTNFKGYVRQKSSKSHGCKMFTRLDHMKNLVYNNLLSDICLVNVLKLWIGKYHLRRDQVWKVGRDNLYVKAKLGMETMFYHIFIYASRIIL
LLVVKALLNLQSRFLRIFLTASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS