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Cucsat.G17551 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G17551
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationctg278:850212..852185
RNA-Seq ExpressionCucsat.G17551
SyntenyCucsat.G17551
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0043167 - ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025264.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.89e-5971.72Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLH HK ANCPT EC Y HKRGHILD  PTR P P GHS KPK SSKT    +VVAAT  DIT   + QL +LHDLLK VISSNSTALAVTPGTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DS CC+ MTS+I  L S I I SLP IHS D NHMSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.56e-5973.1Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLHGHK ANCPTIEC Y HKRGHILDN PTR P P GHSHKPK S K     +V AATS DIT   + QL +LHDLLK VISS STALAVTPGTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DS CC+ MTSDI  LSS I +QSLP IHS D N MSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

KAA0052024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.20e-6171.03Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLHGHK ANCPTIEC Y H+RGHILDN PT  P P GHSHKPK S K     +VVAATS DIT   + QL +LHDLLK +ISS STALAVT GTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DSTCC+ MTSDI   SS I +QSLP IHS D N MSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.53e-5973.1Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLHGHK ANCPTIEC Y HKRGHILDN PTR P P GHSHKPK S K     +V AATS DIT   + QL +LHDLLK VISS STALAVTPGTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DS CC+ MTSDI  LSS I +QSLP IHS D N MSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

XP_031742280.1 uncharacterized protein LOC116404145 [Cucumis sativus]2.02e-7891.34Show/hide
Query:  MSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKH
        MSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKH
Subjt:  MSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKH

Query:  VISSNSTALAVTP----------GTSW
        VISSNSTALAVTP          GT W
Subjt:  VISSNSTALAVTP----------GTSW

TrEMBL top hitse value%identityAlignment
A0A5A7SI05 Putative mitochondrial protein2.37e-5971.72Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLH HK ANCPT EC Y HKRGHILD  PTR P P GHS KPK SSKT    +VVAAT  DIT   + QL +LHDLLK VISSNSTALAVTPGTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DS CC+ MTS+I  L S I I SLP IHS D NHMSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-942.69e-5973.1Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLHGHK ANCPTIEC Y HKRGHILDN PTR P P GHSHKPK S K     +V AATS DIT   + QL +LHDLLK VISS STALAVTPGTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DS CC+ MTSDI  LSS I +QSLP IHS D N MSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

A0A5A7U9K0 Retrovirus-related Pol polyprotein from transposon TNT 1-943.97e-6171.03Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLHGHK ANCPTIEC Y H+RGHILDN PT  P P GHSHKPK S K     +VVAATS DIT   + QL +LHDLLK +ISS STALAVT GTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DSTCC+ MTSDI   SS I +QSLP IHS D N MSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.68e-5973.1Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLHGHK ANCPTIEC Y HKRGHILDN PTR P P GHSHKPK S K     +V AATS DIT   + QL +LHDLLK VISS STALAVTPGTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DS CC+ MTSDI  LSS I +QSLP IHS D N MSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-942.69e-5973.1Show/hide
Query:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL
        NCKLHGHK ANCPTIEC Y HKRGHILDN PTR P P GHSHKPK S K     +V AATS DIT   + QL +LHDLLK VISS STALAVTPGTSWLL
Subjt:  NCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALAVTPGTSWLL

Query:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT
        DS CC+ MTSDI  LSS I +QSLP IHS D N MSISHIGT NT
Subjt:  DSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTCTTGCAACCACACATCCACGACTTGCTAATGAGTCCACTTTCTGCAAATAATTGTAAGCTTCATGGTCATAAGCTTGCTAATTGCCCTACTATTGAGTGTGA
GTATTTTCACAAGCGAGGTCACATCTTGGACAACTATCCCACTCGTTCACCCTGCCCTCATGGTCACTCACATAAACCCAAGTCTTCTTCAAAAACTAGTTATCAACCTA
TTGTTGTTGCTGCCACCTCATTTGATATCACTGCACTTCAGAACTTTCAGCTAAATAATCTTCATGACTTACTGAAACATGTGATCTCTTCCAACTCTACTGCTCTTGCT
GTCACTCCAGGTACTTCTTGGCTCCTTGATTCGACTTGTTGTGATTCTATGACTTCTGACATTTTATTCTTATCCTCACCTATTCTCATTCAATCTCTTCCTCTAATTCA
CTCTAGAGATGATAATCACATGTCAATCTCTCACATTGGCACTTTTAATACA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTCTTGCAACCACACATCCACGACTTGCTAATGAGTCCACTTTCTGCAAATAATTGTAAGCTTCATGGTCATAAGCTTGCTAATTGCCCTACTATTGAGTGTGA
GTATTTTCACAAGCGAGGTCACATCTTGGACAACTATCCCACTCGTTCACCCTGCCCTCATGGTCACTCACATAAACCCAAGTCTTCTTCAAAAACTAGTTATCAACCTA
TTGTTGTTGCTGCCACCTCATTTGATATCACTGCACTTCAGAACTTTCAGCTAAATAATCTTCATGACTTACTGAAACATGTGATCTCTTCCAACTCTACTGCTCTTGCT
GTCACTCCAGGTACTTCTTGGCTCCTTGATTCGACTTGTTGTGATTCTATGACTTCTGACATTTTATTCTTATCCTCACCTATTCTCATTCAATCTCTTCCTCTAATTCA
CTCTAGAGATGATAATCACATGTCAATCTCTCACATTGGCACTTTTAATACA
Protein sequenceShow/hide protein sequence
MSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYFHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVAATSFDITALQNFQLNNLHDLLKHVISSNSTALA
VTPGTSWLLDSTCCDSMTSDILFLSSPILIQSLPLIHSRDDNHMSISHIGTFNT