CuGenDBv2

Gene ID	Cucsat.G17558
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	EAF domain-containing protein
Genome location	ctg278:991302..994910
RNA-Seq Expression	Cucsat.G17558
Synteny	Cucsat.G17558
Gene Ontology terms	GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0032783 - ELL-EAF complex (cellular component) GO:0003711 - transcription elongation regulator activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035866.1 ELL-associated factor 2 [Cucumis melo var. makuwa]

2.84e-178

83.68

Show/hide

Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSF+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-TVA
        RLERLHRA                                              PRLSPPVTKV+KPMHMGRSSFPTMPVEVERIDIGEPGNAGAK  VA
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-TVA

Query:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA
        SKGLT+YSSDPPN SVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVE GFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA
Subjt:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA

Query:  EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
        EQSSSSSSSGSGSGSSSGSSSASSDSE SDEDSVTSI
Subjt:  EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

XP_004148178.1 ELL-associated factor 2 [Cucumis sativus]

1.25e-224

100

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Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS
        RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS

Query:  KGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRAE
        KGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRAE
Subjt:  KGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRAE

Query:  QSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
        QSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
Subjt:  QSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

XP_008454810.1 PREDICTED: ELL-associated factor 2 [Cucumis melo]

2.63e-211

94.71

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Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSF+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVA---APATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-
        RLERLHRAVNQLRHLRQPGESAAA A   A  TTAGVAAPAA P++ASVLHSLTPPEPRLSPPVTKV+KPMHMGRSSFPTMPVEVERIDIGEPGNAGAK 
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVA---APATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-

Query:  TVASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
         VASKGLT+YSSDPPN SVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVE GFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  TVASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GRAEQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
        GRAEQSSSSSSSGSGSGSSSGSSSASSDSE SDEDSVTSI
Subjt:  GRAEQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

XP_022993461.1 ELL-associated factor 1 [Cucurbita maxima]

8.61e-172

78.87

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Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWY+LSLGPSF +ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVT+EFQN+Q GKPN++FVGSSEDYKENDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTV-A
        RLERLHRAV QLRHLRQPGES+AA        GVAA  A+ T+AS LHSLTPPEPRLSPP  KV KPMHMGR SFP++ VEVE+IDIGEPGN GAK+V A
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTV-A

Query:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA
        SKG  +YSSDPPNVS  SPG KNDDEHQDIDIDDIFGSVSSDD NNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGR 
Subjt:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA

Query:  ------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
                          EQSSSSSSS SGSGSSSGSSS SSDSE +DEDSVTSI
Subjt:  ------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

XP_038893321.1 ELL-associated factor 2-like [Benincasa hispida]

3.05e-189

84.92

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Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDKTKPG LKKTKENRVTVEFQN+Q GKPN++FVGSSEDYKENDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAA-PATTAGVAAPAAAPTT--ASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKT
        RLERLHRAV QLRHLRQPGESAAA AA P TT GVAAPA   T+  AS LHSLTPPEPRLSPPV KV+KPMHMGR SFPTMPVEVERIDIGEPGN GAK+
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAA-PATTAGVAAPAAAPTT--ASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKT

Query:  V-ASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
        V ASKGL +YSSDPPNVS SSPGLKNDDEHQDIDIDD+FGSV SDDGNNAEEERVE GFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  V-ASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GRA------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
        GR                   +QSSSSSSSGSGSGSSSGSSS SSDSE SDEDSVTSI
Subjt:  GRA------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM56 EAF domain-containing protein

6.07e-225

100

Show/hide

Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS
        RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS

Query:  KGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRAE
        KGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRAE
Subjt:  KGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRAE

Query:  QSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
        QSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
Subjt:  QSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

A0A1S3C0N3 ELL-associated factor 2

1.27e-211

94.71

Show/hide

Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSF+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVA---APATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-
        RLERLHRAVNQLRHLRQPGESAAA A   A  TTAGVAAPAA P++ASVLHSLTPPEPRLSPPVTKV+KPMHMGRSSFPTMPVEVERIDIGEPGNAGAK 
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVA---APATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-

Query:  TVASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
         VASKGLT+YSSDPPN SVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVE GFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  TVASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GRAEQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
        GRAEQSSSSSSSGSGSGSSSGSSSASSDSE SDEDSVTSI
Subjt:  GRAEQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

A0A5A7T0X1 ELL-associated factor 2

1.37e-178

83.68

Show/hide

Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSF+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-TVA
        RLERLHRA                                              PRLSPPVTKV+KPMHMGRSSFPTMPVEVERIDIGEPGNAGAK  VA
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-TVA

Query:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA
        SKGLT+YSSDPPN SVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVE GFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA
Subjt:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA

Query:  EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
        EQSSSSSSSGSGSGSSSGSSSASSDSE SDEDSVTSI
Subjt:  EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

A0A6J1FGX9 ELL-associated factor 1

5.92e-172

78.31

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Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWY+LSLGPSF +ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVT+EFQN+Q GKPN++FVGSSEDYKENDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-TVA
        RLERLHRAV QLRHLRQPGES+AA  A          AA+ T+AS LHSLTPPEPRLSPP  KV KPMHMGR SFP++ VEVE+IDIGEPGN GAK  VA
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAK-TVA

Query:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA
        SKG  +YSSDPPNVS  SPG KNDDEHQDIDIDDIFGSVSSDD NNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGR 
Subjt:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA

Query:  ------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
                          EQSSSSSSS SGSGSSSGSSS SSDSE +DEDSVTSI
Subjt:  ------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

A0A6J1JWD6 ELL-associated factor 1

4.17e-172

78.87

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Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWY+LSLGPSF +ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVT+EFQN+Q GKPN++FVGSSEDYKENDAVLFFDGETF
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTV-A
        RLERLHRAV QLRHLRQPGES+AA        GVAA  A+ T+AS LHSLTPPEPRLSPP  KV KPMHMGR SFP++ VEVE+IDIGEPGN GAK+V A
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTV-A

Query:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA
        SKG  +YSSDPPNVS  SPG KNDDEHQDIDIDDIFGSVSSDD NNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGR 
Subjt:  SKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRA

Query:  ------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI
                          EQSSSSSSS SGSGSSSGSSS SSDSE +DEDSVTSI
Subjt:  ------------------EQSSSSSSSGSGSGSSSGSSSASSDSEASDEDSVTSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71080.1 RNA polymerase II transcription elongation factor

2.5e-67

50.97

Show/hide

Query:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF
        M+N+  +EP TAP+ D+WY+L LG S KD+SS+KFCT RYEFKPASIDK + G + K K+NRV+VEFQN+QPGKP ++F GSSEDYKE+DAVLFFDGE F
Subjt:  MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS
        RLERLHRAV QLRH+R PGESAAA                        S  P E RLS PV + +K   + RS  P +PVEVERI+IG+P N+       
Subjt:  RLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVAS

Query:  KGLTNYSSDPPNVSVSSP-GLKND--DEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQ--NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVN
               ++  NV  +SP   KND  DEHQ+ID+ +IFGS + ++ +NAE+E  + G  +   ++  + T++EIADV DDSG E EKG NAAEALRAQVN
Subjt:  KGLTNYSSDPPNVSVSSP-GLKND--DEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQ--NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVN

Query:  AEGRAEQSSSSS------------------SSGSGSGSSSGSSSASSDSEAS-DEDSVTSI
        AE +  Q+SSSS                  SSGSGSG  S S S+S  S  S DED V S+
Subjt:  AEGRAEQSSSSS------------------SSGSGSGSSSGSSSASSDSEAS-DEDSVTSI

AT5G38050.1 RNA polymerase II transcription elongation factor

6.8e-41

41.12

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Query:  NNIPEEPKTAPQPDRWYNLSLGPSFKDES---SNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDY--KENDAVLFFDG
        +N  EEPK AP+P+RWYN++LGP+  + +   S KFCT RYEFKPASID TKPG L K+K+N+VT+EFQN+Q  KP + F G SEDY  ++ DA+LFFDG
Subjt:  NNIPEEPKTAPQPDRWYNLSLGPSFKDES---SNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDY--KENDAVLFFDG

Query:  ETFRLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKT
        E FRLE+LHR+V +L+ LR P ESA+A                                 S  VTK+  P+          PV++  IDI  P       
Subjt:  ETFRLERLHRAVNQLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKT

Query:  VASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPG--FDINIPHQND-TDDEIADVDDSGDEAEKGPNAAEALRAQVN
                                  D  +D++I+D      +++   + +E    G   DIN+PH  +  DDEIA VD + DE+ KG NAAEALRAQVN
Subjt:  VASKGLTNYSSDPPNVSVSSPGLKNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPG--FDINIPHQND-TDDEIADVDDSGDEAEKGPNAAEALRAQVN

Query:  AEGRAEQSSSSSSSGSGSGSSSGSSSASSDSEASDEDS
        AE R E+S  SSSSGSG  S S  S   S    S   S
Subjt:  AEGRAEQSSSSSSSGSGSGSSSGSSSASSDSEASDEDS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAACAACATCCCAGAAGAACCGAAGACCGCGCCCCAGCCCGATCGGTGGTATAACCTATCCCTTGGTCCTTCATTCAAGGATGAATCGTCCAACAAATTTTGCAC
TTTTCGATATGAATTTAAACCCGCTTCAATTGATAAAACGAAGCCGGGGTGGCTGAAAAAGACCAAGGAAAATAGGGTTACTGTTGAATTTCAAAACAGTCAACCTGGGA
AACCCAATTTGTCGTTCGTTGGTAGCAGTGAGGATTACAAAGAGAATGATGCCGTTTTGTTTTTTGATGGTGAGACATTCCGGTTGGAGCGGCTGCACCGAGCGGTCAAT
CAGCTTCGACACCTTCGACAGCCAGGTGAATCTGCTGCTGCTGTCGCTGCCCCTGCCACTACCGCAGGCGTGGCTGCCCCTGCTGCCGCACCCACCACGGCTTCTGTCCT
TCATTCTTTGACACCGCCGGAGCCTCGGTTATCTCCTCCAGTGACTAAAGTTTCCAAACCTATGCATATGGGTCGAAGCAGTTTTCCAACCATGCCGGTAGAGGTGGAGC
GAATCGATATTGGAGAGCCAGGAAATGCAGGTGCAAAAACTGTTGCTAGTAAAGGCCTTACTAATTACTCATCAGATCCACCAAATGTATCTGTTTCCTCTCCAGGCCTG
AAGAACGATGATGAGCATCAAGATATAGATATTGATGATATTTTCGGGTCTGTTTCATCTGATGATGGAAATAATGCTGAAGAAGAAAGAGTTGAGCCTGGATTCGATAT
AAATATACCACATCAGAACGATACGGACGATGAGATTGCTGATGTGGATGATAGTGGCGATGAAGCCGAGAAGGGACCTAATGCTGCAGAAGCCCTCAGAGCTCAGGTTA
ATGCAGAAGGTAGGGCCGAGCAGAGCTCAAGTTCTAGTAGTAGCGGATCAGGCAGTGGAAGCAGCAGTGGAAGTAGTAGTGCCAGCAGTGATAGTGAAGCTAGTGATGAG
GATTCGGTTACCTCAATTTAA

mRNA sequence

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Protein sequence

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MANNIPEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTFRYEFKPASIDKTKPGWLKKTKENRVTVEFQNSQPGKPNLSFVGSSEDYKENDAVLFFDGETFRLERLHRAVN
QLRHLRQPGESAAAVAAPATTAGVAAPAAAPTTASVLHSLTPPEPRLSPPVTKVSKPMHMGRSSFPTMPVEVERIDIGEPGNAGAKTVASKGLTNYSSDPPNVSVSSPGL
KNDDEHQDIDIDDIFGSVSSDDGNNAEEERVEPGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRAEQSSSSSSSGSGSGSSSGSSSASSDSEASDE
DSVTSI

Cucsat.G17558 (gene) of Cucumber (B10) v3 genome