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Cucsat.G17687 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G17687
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptioncyclic nucleotide gated channel 1
Genome locationctg304:86186..86873
RNA-Seq ExpressionCucsat.G17687
SyntenyCucsat.G17687
Gene Ontology termsGO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005216 - ion channel activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650810.1 hypothetical protein Csa_017627 [Cucumis sativus]1.31e-52100Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT
        QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT

XP_011651603.1 cyclic nucleotide-gated ion channel 1 isoform X1 [Cucumis sativus]4.71e-3984.88Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVI
        QIILV VF SRK IKY KN WRLIFLPLFQFVPRIIRIY+LCKKLSRSAAPN IT TGQFRGTFNF+LFI ASHV+GAFWYCF+V+
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVI

XP_011651604.1 cyclic nucleotide-gated ion channel 1 isoform X2 [Cucumis sativus]3.46e-5283.81Show/hide
Query:  MDGCPCRFFGNASPSTGNVQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWY
        MD C CR FG+ASPSTGNVQIILV VF SRK IKY KN WRLIFLPLFQFVPRIIRIY+LCKKLSRSAAPN IT TGQFRGTFNF+LFI ASHV+GAFWY
Subjt:  MDGCPCRFFGNASPSTGNVQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWY

Query:  CFSVI
        CF+V+
Subjt:  CFSVI

XP_016900694.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo]4.37e-3677.27Show/hide
Query:  VQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT
        ++IIL GVF +RKGI YF+NKWRLIFLPLFQFVPRIIRI++LCKK SRSAA N IT T QFRG FNFVL I ASHVVG FWYCFS++T
Subjt:  VQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT

XP_031738675.1 cyclic nucleotide-gated ion channel 1-like [Cucumis sativus]4.32e-71100Show/hide
Query:  MDGCPCRFFGNASPSTGNVQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWY
        MDGCPCRFFGNASPSTGNVQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWY
Subjt:  MDGCPCRFFGNASPSTGNVQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWY

Query:  CFSVIT
        CFSVIT
Subjt:  CFSVIT

TrEMBL top hitse value%identityAlignment
A0A0A0L8V1 Uncharacterized protein4.38e-4184.88Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVI
        QIILV VF SRK IKY KN WRLIFLPLFQFVPRIIRIY+LCKKLSRSAAPN IT TGQFRGTFNF+LFI ASHV+GAFWYCF+V+
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVI

A0A1S3BLM4 cyclic nucleotide-gated ion channel 1-like isoform X14.32e-3679.31Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT
        QIIL GVF +RKGI YF+NKWRLIFLPLFQFVPRIIRI++LCKK SRSAA N IT T QFRG FNFVL I ASHVVG FWYCFS++T
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT

A0A1S4DXJ0 cyclic nucleotide-gated ion channel 1-like isoform X24.15e-3679.31Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT
        QIIL GVF +RKGI YF+NKWRLIFLPLFQFVPRIIRI++LCKK SRSAA N IT T QFRG FNFVL I ASHVVG FWYCFS++T
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT

A0A1S4DYA3 cyclic nucleotide-gated ion channel 1-like isoform X32.12e-3677.27Show/hide
Query:  VQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT
        ++IIL GVF +RKGI YF+NKWRLIFLPLFQFVPRIIRI++LCKK SRSAA N IT T QFRG FNFVL I ASHVVG FWYCFS++T
Subjt:  VQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT

A0A5D3DCD7 Cyclic nucleotide-gated ion channel 1-like isoform X24.15e-3679.31Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT
        QIIL GVF +RKGI YF+NKWRLIFLPLFQFVPRIIRI++LCKK SRSAA N IT T QFRG FNFVL I ASHVVG FWYCFS++T
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT

SwissProt top hitse value%identityAlignment
A0A072VMJ3 Protein CNGC15c9.7e-0731.76Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        Q+++  + P+ +G      K  L F  +FQ++PR+  I+ L  ++ +  A  V+T+T      +N +L++LASH++GA WY  S+
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

O65717 Cyclic nucleotide-gated ion channel 11.7e-1140Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        Q++++ + P  +G      K  L F+  FQ++PR IRIY L K+++R++   ++T+T      FN  L++LASHV GAFWY FS+
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

Q8RWS9 Probable cyclic nucleotide-gated ion channel 54.4e-0734.12Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        QI++     S  G      K  L+F+ L Q++PR +R+  L  +L R+A   V  +T      +  +L++LASH+VGAFWY  ++
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

Q9LNJ0 Probable cyclic nucleotide-gated ion channel 105.7e-0737.65Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        QI+++ V PS         K  L F  + Q+VPRI+R+Y L  +++R++   ++T+T      +N  L++LASHV GA WY  SV
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

Q9SL29 Putative cyclic nucleotide-gated ion channel 153.4e-0734.12Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        Q+++  + P+ +G      K  L F+ +FQ+VPR+  I+ L +++ +  A  V+T+T      +N +L++LASHV+GA WY  +V
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

Arabidopsis top hitse value%identityAlignment
AT2G28260.1 cyclic nucleotide-gated channel 152.4e-0834.12Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        Q+++  + P+ +G      K  L F+ +FQ+VPR+  I+ L +++ +  A  V+T+T      +N +L++LASHV+GA WY  +V
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

AT5G53130.1 cyclic nucleotide gated channel 11.2e-1240Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        Q++++ + P  +G      K  L F+  FQ++PR IRIY L K+++R++   ++T+T      FN  L++LASHV GAFWY FS+
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

AT5G57940.1 cyclic nucleotide gated channel 53.1e-0834.12Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        QI++     S  G      K  L+F+ L Q++PR +R+  L  +L R+A   V  +T      +  +L++LASH+VGAFWY  ++
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

AT5G57940.2 cyclic nucleotide gated channel 53.1e-0834.12Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        QI++     S  G      K  L+F+ L Q++PR +R+  L  +L R+A   V  +T      +  +L++LASH+VGAFWY  ++
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV

AT5G57940.3 cyclic nucleotide gated channel 53.1e-0834.12Show/hide
Query:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV
        QI++     S  G      K  L+F+ L Q++PR +R+  L  +L R+A   V  +T      +  +L++LASH+VGAFWY  ++
Subjt:  QIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGATGTCCTTGTCGATTTTTTGGCAATGCTTCCCCTTCCACAGGAAATGTGCAGATTATCCTTGTGGGAGTCTTTCCAAGTAGGAAAGGTATCAAATATTTTAA
AAACAAGTGGCGACTGATTTTTCTGCCTCTCTTCCAATTTGTCCCAAGAATCATTCGAATCTACCTGTTATGTAAGAAGCTTTCCAGGAGTGCTGCTCCTAATGTCATAA
CAAAAACCGGGCAGTTCAGAGGCACATTCAATTTCGTCCTCTTCATTCTTGCCAGCCATGTGGTTGGAGCATTTTGGTACTGCTTCTCAGTTATAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGATGTCCTTGTCGATTTTTTGGCAATGCTTCCCCTTCCACAGGAAATGTGCAGATTATCCTTGTGGGAGTCTTTCCAAGTAGGAAAGGTATCAAATATTTTAA
AAACAAGTGGCGACTGATTTTTCTGCCTCTCTTCCAATTTGTCCCAAGAATCATTCGAATCTACCTGTTATGTAAGAAGCTTTCCAGGAGTGCTGCTCCTAATGTCATAA
CAAAAACCGGGCAGTTCAGAGGCACATTCAATTTCGTCCTCTTCATTCTTGCCAGCCATGTGGTTGGAGCATTTTGGTACTGCTTCTCAGTTATAACATAA
Protein sequenceShow/hide protein sequence
MDGCPCRFFGNASPSTGNVQIILVGVFPSRKGIKYFKNKWRLIFLPLFQFVPRIIRIYLLCKKLSRSAAPNVITKTGQFRGTFNFVLFILASHVVGAFWYCFSVIT