; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G17888 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G17888
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial
Genome locationctg3345:379427..382034
RNA-Seq ExpressionCucsat.G17888
SyntenyCucsat.G17888
Gene Ontology termsGO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063485.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]2.38e-8493.01Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF+PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEV HARVVTDR TGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

KAG6592009.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.44e-8186.36Show/hide
Query:  KGFSTLNPNPMALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEP-STITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKR
        +GFS+LNP  MALRSAAA+APRSLR+LIT TS RTLPI  QAIHD EKP P +T  F+SGRLFSSASTSSFIPPPLPPSAQQRE  EPSTNLFVSGLSKR
Subjt:  KGFSTLNPNPMALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEP-STITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKR

Query:  TTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        TTTEKL+EAFAKFGEV HARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  TTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

XP_004151968.1 organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus]5.69e-92100Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

XP_008454580.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]7.81e-8593.01Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF+PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEV HARVVTDR TGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

XP_038896843.1 organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]8.77e-8493.01Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAA+APRSLR+LIT TSTRTLPIISQ IHDWEK EPST  FLSGRLFSSASTSSFIPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAFA
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEV HARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

TrEMBL top hitse value%identityAlignment
A0A0A0LD10 RRM domain-containing protein2.75e-92100Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

A0A1S3C066 glycine-rich RNA-binding protein 4, mitochondrial3.78e-8593.01Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF+PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEV HARVVTDR TGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

A0A5D3DR24 Glycine-rich RNA-binding protein 41.15e-8493.01Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF+PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEV HARVVTDR TGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

A0A6J1FQV3 organelle RRM domain-containing protein 2, mitochondrial-like7.82e-7888.81Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAA APRSLR+LIT TS+RTLPIISQAI DWEK E ST  F+SGRLFSS S SSFIPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKL+EAFA
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEV HARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

A0A6J1INZ4 organelle RRM domain-containing protein 2, mitochondrial-like2.56e-7887.41Show/hide
Query:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA
        MALRSAAA+APRSLR+LIT TS RTLP+  QAIHD EKP P+T  F+SGRLFSSASTSSFIPPPLPPSA QRE  EPSTNLFVSGLSKRTTTEKLHE FA
Subjt:  MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFA

Query:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        KFGEV HARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
Subjt:  KFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

SwissProt top hitse value%identityAlignment
Q99070 Glycine-rich RNA-binding protein 21.5e-0944.93Show/hide
Query:  AEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        A+     FV GL+  T  E L +AFA FG+V  ++V+TDR TG S+GFGFV +++ +     IE M+GK
Subjt:  AEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial1.8e-2862.18Show/hide
Query:  LPIISQAIHDWEKPEPSTITFLSGRLF-SSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGF
        LP IS+A+      E ++      RLF S+AS  SF+ P        R  AEPSTNLFVSGLSKRTT+E L  AFA+FGEVA A+VVTDRV+GYSKGFGF
Subjt:  LPIISQAIHDWEKPEPSTITFLSGRLF-SSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGF

Query:  VKYATLEDAAKGIEGMDGK
        V+YATLED+AKGI GMDGK
Subjt:  VKYATLEDAAKGIEGMDGK

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial6.6e-1041.56Show/hide
Query:  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        PS  Q      S+ LF+ G++     + L EAF K+GEV   RV+ DR TG S+GFGFV + + E A+  I+ +DG+
Subjt:  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic4.1e-1243.88Show/hide
Query:  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG + H  +V D+V    KGF F++Y T E+A K I+GM GK
Subjt:  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial1.5e-0942.27Show/hide
Query:  LSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        LSG L    S SS      P ++    +   S+ LFV GLS  T    L +AF  FGEV  A V+ DR TG S+GFGFV ++  + A   I+ MDGK
Subjt:  LSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-1343.88Show/hide
Query:  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG + H  +V D+V    KGF F++Y T E+A K I+GM GK
Subjt:  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-1662.12Show/hide
Query:  STNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        S  LFVSGLS+ TT EKL +AFA FG++  ARV+TDR +G SKGFGFV YAT+EDA K    M+ K
Subjt:  STNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

AT3G23830.1 glycine-rich RNA-binding protein 41.0e-1042.27Show/hide
Query:  LSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        LSG L    S SS      P ++    +   S+ LFV GLS  T    L +AF  FGEV  A V+ DR TG S+GFGFV ++  + A   I+ MDGK
Subjt:  LSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-2962.18Show/hide
Query:  LPIISQAIHDWEKPEPSTITFLSGRLF-SSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGF
        LP IS+A+      E ++      RLF S+AS  SF+ P        R  AEPSTNLFVSGLSKRTT+E L  AFA+FGEVA A+VVTDRV+GYSKGFGF
Subjt:  LPIISQAIHDWEKPEPSTITFLSGRLF-SSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGF

Query:  VKYATLEDAAKGIEGMDGK
        V+YATLED+AKGI GMDGK
Subjt:  VKYATLEDAAKGIEGMDGK

AT5G61030.1 glycine-rich RNA-binding protein 34.7e-1141.56Show/hide
Query:  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
        PS  Q      S+ LF+ G++     + L EAF K+GEV   RV+ DR TG S+GFGFV + + E A+  I+ +DG+
Subjt:  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGTCCTCCTTCCTCAAAACGAAAAAGAAAAAAAATCTGTTTTTCCTCGCCTCTTCCAGAAAGGGTTTAGTACCTTAAACCCCAATCCTATGGCTCTCAGATCGGCGGC
GGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCA
TTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAAC
CTTTTCGTTTCCGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGCAAGAGTTGTAACTGATCGAGTGACTGG
ATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCAGTTTTCTCAT
TTGAGACGTTGAAGTTTATTTGGTGTGTATGTAGTGTTAATCCACATTTACATAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCATAG
mRNA sequenceShow/hide mRNA sequence
AGAGTCCTCCTTCCTCAAAACGAAAAAGAAAAAAAATCTGTTTTTCCTCGCCTCTTCCAGAAAGGGTTTAGTACCTTAAACCCCAATCCTATGGCTCTCAGATCGGCGGC
GGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCA
TTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAAC
CTTTTCGTTTCCGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGCAAGAGTTGTAACTGATCGAGTGACTGG
ATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCAGTTTTCTCAT
TTGAGACGTTGAAGTTTATTTGGTGTGTATGTAGTGTTAATCCACATTTACATAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCATAG
Protein sequenceShow/hide protein sequence
RVLLPQNEKEKKSVFPRLFQKGFSTLNPNPMALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTN
LFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKVSWDHFPVFSFETLKFIWCVCSVNPHLHKIPGSCIQCFSHVLA