CuGenDBv2

Gene ID	Cucsat.G18042
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	F-box protein SNE
Genome location	ctg3345:4280190..4283563
RNA-Seq Expression	Cucsat.G18042
Synteny	Cucsat.G18042
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

3.15e-104

98.03

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

2.31e-106

100

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

1.82e-103

97.37

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

XP_022985800.1 F-box protein SNE-like [Cucurbita maxima]

1.74e-99

93.46

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG-EASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+GG +ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG-EASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

2.22e-104

98.03

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

1.12e-106

100

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

8.84e-104

97.37

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

1.53e-104

98.03

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

A0A6J1FVJ9 F-box protein SNE-like

1.76e-99

92.21

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG--EASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+GG  +ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG--EASALSLMFLCNTVNV

A0A6J1JCA9 F-box protein SNE-like

8.44e-100

93.46

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG-EASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+GG +ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG-EASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

3.6e-10

33.91

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Query:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKTVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV
        D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       ++ VV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKTVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

1.6e-34

52.6

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   G+A   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

1.4e-11

34.19

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Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + +++VV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.0e-12

34.19

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Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + +++VV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

AT5G48170.1 F-box family protein

1.1e-35

52.6

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   G+A   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

Sequences

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CDS sequence

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ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCT
CGGGGTCGCGACCTGTGTCTGCCGGCTATGGTGCACCATAGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCGGTGA
AAACGGTGGTAGCCGCCTTGGGAGGGTACAAGAGGCTATACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAG
GATGAGGTCCAACTTTCACTTTCTCTGTTTTGTGTGGACTATTACGAGAGGCTCACTGGGAGTGGAAGAATAGGCGGCGAGGCATCCGCATTGTCCCTCATGTTCCTGTG
CAACACAGTGAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQ
DEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV

Cucsat.G18042 (gene) of Cucumber (B10) v3 genome