; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G18124 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18124
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationctg3345:873821..875736
RNA-Seq ExpressionCucsat.G18124
SyntenyCucsat.G18124
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.19e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K+ LPTP  N+G  KP+W+L+ +  F  A +K A + +       F  + +  LWK   P KC FF W +IHG IN  +  QKR  +  L+P+WC +C 
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
         + E+I+H F
Subjt:  SNNEEIDHCF

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.66e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K+ LPTP  N+G+ KP+W L+ +  F  A +K  L ++       F  + +  LWK   P KC FF W +IHG IN  +  QKR  +  L+P+WC +C 
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
         + E+I+H F
Subjt:  SNNEEIDHCF

KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.10e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K  LP   +N+GISKP+W  S    + +A  K+    +              +LW++ IP KC FF W ++H  +N M+  QKRN S CLNP+WC  C+
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
        S+NE+++H F
Subjt:  SNNEEIDHCF

TYK10888.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.95e-2037.74Show/hide
Query:  LPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQSNNE
        LP    N+GISKP+W  S    + +A  K+    +              +LW++ IP KC FF W ++H  +N M+  QKRN + CLNP+WC  C+S+NE
Subjt:  LPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQSNNE

Query:  EIDHCF
        +++H F
Subjt:  EIDHCF

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.25e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K+ LPTP  N+G+ KP+W L+ +  F  A +K  L ++       F  + +  LWK   P KC FF W +IHG IN  +  QKR  +  L+P+WC +C 
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
         + E+I+H F
Subjt:  SNNEEIDHCF

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.48e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K+ LPTP  N+G  KP+W+L+ +  F  A +K A + +       F  + +  LWK   P KC FF W +IHG IN  +  QKR  +  L+P+WC +C 
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
         + E+I+H F
Subjt:  SNNEEIDHCF

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein2.26e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K+ LPTP  N+G+ KP+W L+ +  F  A +K  L ++       F  + +  LWK   P KC FF W +IHG IN  +  QKR  +  L+P+WC +C 
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
         + E+I+H F
Subjt:  SNNEEIDHCF

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein2.95e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K  LP   +N+GISKP+W  S    + +A  K+    +              +LW++ IP KC FF W ++H  +N M+  QKRN S CLNP+WC  C+
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
        S+NE+++H F
Subjt:  SNNEEIDHCF

A0A5D3CI43 LINE-1 retrotransposable element ORF2 protein1.43e-2037.74Show/hide
Query:  LPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQSNNE
        LP    N+GISKP+W  S    + +A  K+    +              +LW++ IP KC FF W ++H  +N M+  QKRN + CLNP+WC  C+S+NE
Subjt:  LPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQSNNE

Query:  EIDHCF
        +++H F
Subjt:  EIDHCF

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein2.06e-2038.18Show/hide
Query:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ
        +K+ LPTP  N+G+ KP+W L+ +  F  A +K  L ++       F  + +  LWK   P KC FF W +IHG IN  +  QKR  +  L+P+WC +C 
Subjt:  MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQ

Query:  SNNEEIDHCF
         + E+I+H F
Subjt:  SNNEEIDHCF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGCATTCTTCCAACACCTTGTGCCAACAAAGGAATAAGCAAACCAATATGGGATCTCAGTAAAGATAGACAATTCTTCATTGCCTATATCAAGAACGCATTAGT
TACTGATATTCAATCCATTCTCATGGGCTTTGATCATCATCACTTCTCAAACCTCTGGAAGGCGGTCATTCCAAATAAATGCAATTTTTTCACTTGGTGTATCATTCATG
GGGGAATTAATATTATGGAGCTATGGCAAAAGAGAAATTTGAGCACTTGTCTTAACCCTCACTGGTGCTCTCTTTGTCAGTCAAACAACGAGGAGATTGATCACTGCTTT
TATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGCATTCTTCCAACACCTTGTGCCAACAAAGGAATAAGCAAACCAATATGGGATCTCAGTAAAGATAGACAATTCTTCATTGCCTATATCAAGAACGCATTAGT
TACTGATATTCAATCCATTCTCATGGGCTTTGATCATCATCACTTCTCAAACCTCTGGAAGGCGGTCATTCCAAATAAATGCAATTTTTTCACTTGGTGTATCATTCATG
GGGGAATTAATATTATGGAGCTATGGCAAAAGAGAAATTTGAGCACTTGTCTTAACCCTCACTGGTGCTCTCTTTGTCAGTCAAACAACGAGGAGATTGATCACTGCTTT
TATTAG
Protein sequenceShow/hide protein sequence
MKSILPTPCANKGISKPIWDLSKDRQFFIAYIKNALVTDIQSILMGFDHHHFSNLWKAVIPNKCNFFTWCIIHGGINIMELWQKRNLSTCLNPHWCSLCQSNNEEIDHCF
Y