; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G18141 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18141
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionXS domain-containing protein
Genome locationctg3345:1252837..1256433
RNA-Seq ExpressionCucsat.G18141
SyntenyCucsat.G18141
Gene Ontology termsGO:0031047 - gene silencing by RNA (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005380 - XS domain
IPR038588 - XS domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KDP34702.1 hypothetical protein JCGZ_10907 [Jatropha curcas]2.59e-6456.11Show/hide
Query:  SKSKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA
        S SKEFVD LSL QHA  + + GSR+EHLGLHKALC LMGW +    NG WVR ILP  E  +LKEDLIIWP V+IIHNSSI      E + +S E L+ 
Subjt:  SKSKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA

Query:  AVRAMGCGGKF-KVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHK-INLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDF
         +R MGC  +   + RGKA NQS MVV+F   F GLQ AERLH +F +K  GR EF + I+  C   +N +  + T A+ +ESV YGYLG+  DLDKLDF
Subjt:  AVRAMGCGGKF-KVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHK-INLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDF

Query:  ETKKRSVVRSKKEIQAIVHAS
        E KKR VV+SKKEI+AI +A+
Subjt:  ETKKRSVVRSKKEIQAIVHAS

XP_008458617.1 PREDICTED: uncharacterized protein LOC103497964 [Cucumis melo]4.07e-12286.88Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE APNGLWVR ILP  EVLALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA 
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK
        +R MGCGGK KVVRG+  NQSIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+DSNVD+HKATGANTLESV YGYLGL EDL KLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASLQC
Subjt:  KRSVVRSKKEIQAIVHASLQC

XP_011657058.1 uncharacterized protein LOC105435801 [Cucumis sativus]1.61e-179100Show/hide
Query:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDL
        MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDL
Subjt:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDL

Query:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNV
        IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNV
Subjt:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNV

Query:  DMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        DMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
Subjt:  DMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

XP_022140332.1 uncharacterized protein LOC111011032 [Momordica charantia]2.18e-8976.09Show/hide
Query:  MGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA
        MGWSSE+APNGLWV+ ILP VE  ALKEDLIIWP VLIIHNSSIA D   E V ISCE+LE  +R MG GGK KVVRGK  NQSIMVVTF AMF GLQEA
Subjt:  MGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA

Query:  ERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        ERLH NFADKSHGRDEFH+IN    +DS+ D+HKA GAN +ESV YGYLGL ED +KLDFETKKRSVV+SKKEIQAIV A+LQC
Subjt:  ERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

XP_038900433.1 uncharacterized protein LOC120087658 [Benincasa hispida]2.98e-11080.09Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEF DALSL QHAS+TLEGSRAEHLGL KALCWLMGWSSE AP+G WVR ILP  EVLALKEDLIIWP VLIIHNSSIAID   E VAISCE+LE  
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK
        +R MGCGGK KVVRGK  NQSIM+VTF AMF GLQEAERLH +FADKSHGRDEF KI    L+DS+ D+HKATGANTL++V YGYLGL EDLDKLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASL C
Subjt:  KRSVVRSKKEIQAIVHASLQC

TrEMBL top hitse value%identityAlignment
A0A067KF33 XS domain-containing protein1.25e-6456.11Show/hide
Query:  SKSKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA
        S SKEFVD LSL QHA  + + GSR+EHLGLHKALC LMGW +    NG WVR ILP  E  +LKEDLIIWP V+IIHNSSI      E + +S E L+ 
Subjt:  SKSKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA

Query:  AVRAMGCGGKF-KVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHK-INLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDF
         +R MGC  +   + RGKA NQS MVV+F   F GLQ AERLH +F +K  GR EF + I+  C   +N +  + T A+ +ESV YGYLG+  DLDKLDF
Subjt:  AVRAMGCGGKF-KVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHK-INLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDF

Query:  ETKKRSVVRSKKEIQAIVHAS
        E KKR VV+SKKEI+AI +A+
Subjt:  ETKKRSVVRSKKEIQAIVHAS

A0A0A0KGN5 XS domain-containing protein7.78e-180100Show/hide
Query:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDL
        MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDL
Subjt:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDL

Query:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNV
        IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNV
Subjt:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNV

Query:  DMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        DMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
Subjt:  DMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

A0A1S3C894 uncharacterized protein LOC1034979641.97e-12286.88Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE APNGLWVR ILP  EVLALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA 
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK
        +R MGCGGK KVVRG+  NQSIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+DSNVD+HKATGANTLESV YGYLGL EDL KLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASLQC
Subjt:  KRSVVRSKKEIQAIVHASLQC

A0A5A7SQC0 XS domain-containing protein1.97e-12286.88Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE APNGLWVR ILP  EVLALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA 
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK
        +R MGCGGK KVVRG+  NQSIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+DSNVD+HKATGANTLESV YGYLGL EDL KLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASLQC
Subjt:  KRSVVRSKKEIQAIVHASLQC

A0A6J1CGJ5 uncharacterized protein LOC1110110321.06e-8976.09Show/hide
Query:  MGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA
        MGWSSE+APNGLWV+ ILP VE  ALKEDLIIWP VLIIHNSSIA D   E V ISCE+LE  +R MG GGK KVVRGK  NQSIMVVTF AMF GLQEA
Subjt:  MGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA

Query:  ERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        ERLH NFADKSHGRDEFH+IN    +DS+ D+HKA GAN +ESV YGYLGL ED +KLDFETKKRSVV+SKKEIQAIV A+LQC
Subjt:  ERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G22430.1 CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380)1.2e-2133.18Show/hide
Query:  SKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAV
        SK+  D  SL  H   + +  SR  HLGLHKALC LMGW+   AP+       LP  E    +  LIIWP  +I+ N+S    K         + ++  +
Subjt:  SKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAV

Query:  RAMG-CGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKIN-LRCLVDSN-----VDMHKATGANTLESVRYGYLGLVEDLDK
        R +G  GGK K + G+  +  I +  F     GL++A R+   F   + GR  + ++  L    D       V++   TG    + + YGYL  V DLDK
Subjt:  RAMG-CGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKIN-LRCLVDSN-----VDMHKATGANTLESVRYGYLGLVEDLDK

Query:  LDFETKKRSVVRSKKEI
        +D ETKK++ + S +E+
Subjt:  LDFETKKRSVVRSKKEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCCATTTATTTTGGCAAAGCCTCTTTATCTTGGTGCACATGTTTCAGGTTTCTGTATATATATTGCTTGCTAAATTTACTCGCATTTTTATCAGCAAGTCCAA
GGAGTTTGTAGATGCACTAAGCTTACCACAACATGCCTCTCGGACGCTGGAAGGATCTAGGGCAGAACACTTGGGTCTTCATAAAGCACTTTGTTGGCTCATGGGATGGA
GCAGTGAAATAGCGCCAAATGGTCTATGGGTACGAATGATATTACCTCCTGTAGAAGTACTTGCTTTGAAGGAGGATCTCATTATATGGCCCTCCGTTCTTATCATTCAT
AATAGTTCTATTGCAATTGATAAACGATATGAAGGGGTAGCCATAAGCTGTGAGAAGCTTGAGGCTGCTGTAAGAGCAATGGGTTGTGGAGGGAAGTTCAAAGTGGTACG
TGGTAAAGCTGTAAACCAGAGTATTATGGTTGTAACTTTTGGTGCGATGTTTTATGGGTTGCAAGAAGCAGAAAGACTACACAACAACTTTGCAGATAAGAGTCACGGCA
GGGACGAGTTCCATAAAATCAATTTGAGATGTCTCGTTGACAGCAACGTGGATATGCATAAAGCAACAGGAGCAAACACATTGGAGAGTGTACGTTATGGCTACTTAGGC
CTCGTCGAGGACTTGGATAAACTCGACTTTGAGACCAAGAAGAGATCTGTGGTGAGAAGCAAGAAAGAAATCCAAGCCATTGTGCATGCATCTCTTCAGTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCCATTTATTTTGGCAAAGCCTCTTTATCTTGGTGCACATGTTTCAGGTTTCTGTATATATATTGCTTGCTAAATTTACTCGCATTTTTATCAGCAAGTCCAA
GGAGTTTGTAGATGCACTAAGCTTACCACAACATGCCTCTCGGACGCTGGAAGGATCTAGGGCAGAACACTTGGGTCTTCATAAAGCACTTTGTTGGCTCATGGGATGGA
GCAGTGAAATAGCGCCAAATGGTCTATGGGTACGAATGATATTACCTCCTGTAGAAGTACTTGCTTTGAAGGAGGATCTCATTATATGGCCCTCCGTTCTTATCATTCAT
AATAGTTCTATTGCAATTGATAAACGATATGAAGGGGTAGCCATAAGCTGTGAGAAGCTTGAGGCTGCTGTAAGAGCAATGGGTTGTGGAGGGAAGTTCAAAGTGGTACG
TGGTAAAGCTGTAAACCAGAGTATTATGGTTGTAACTTTTGGTGCGATGTTTTATGGGTTGCAAGAAGCAGAAAGACTACACAACAACTTTGCAGATAAGAGTCACGGCA
GGGACGAGTTCCATAAAATCAATTTGAGATGTCTCGTTGACAGCAACGTGGATATGCATAAAGCAACAGGAGCAAACACATTGGAGAGTGTACGTTATGGCTACTTAGGC
CTCGTCGAGGACTTGGATAAACTCGACTTTGAGACCAAGAAGAGATCTGTGGTGAGAAGCAAGAAAGAAATCCAAGCCATTGTGCATGCATCTCTTCAGTGTTAG
Protein sequenceShow/hide protein sequence
MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIH
NSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLG
LVEDLDKLDFETKKRSVVRSKKEIQAIVHASLQC