CuGenDBv2

Gene ID	Cucsat.G18161
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Rep_fac-A_C domain-containing protein
Genome location	ctg3345:1611039..1614148
RNA-Seq Expression	Cucsat.G18161
Synteny	Cucsat.G18161
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

KGN46888.2 hypothetical protein Csa_020864 [Cucumis sativus]

1.70e-111

100

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

XP_008465398.1 PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]

2.68e-106

96.25

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNPSS LCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

6.65e-97

90.45

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

6.00e-97

90.45

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV

XP_031742644.1 uncharacterized protein LOC101220454 [Cucumis sativus]

1.77e-108

95.21

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFA--------AETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        PFA        AETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  PFA--------AETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEN7 Uncharacterized protein

8.03e-109

100

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A1S3CNQ4 uncharacterized protein LOC103503028

1.30e-106

96.25

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNPSS LCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

A0A5A7T1G5 Uncharacterized protein

3.86e-96

95.92

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Query:  MCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVS
        MCAV+AMDYTNFCYRVCSICERTLPVNPSS LCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAAETVS
Subjt:  MCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVS

Query:  EILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        EIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  EILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

3.22e-97

90.45

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

2.90e-97

90.45

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.6e-42

52.87

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Query:  TTMCAVMAMDYTNFCYRVCSICERTLPVN-----PSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF
        T +C ++A+D T++CYRVCS C+R LP +      SS CKFC        S   K ++R+LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P 
Subjt:  TTMCAVMAMDYTNFCYRVCSICERTLPVN-----PSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF

Query:  AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        AA  V+++ +GEMLR+T+++P+N NAQH RV  +VPL S  QPAI+ LR++   N++
Subjt:  AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

Sequences

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CDS sequence

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TTAATTAACAAAAGCACCCCTAGCAGTATCGAAAATTTCGTCCTCTCGACCATTTCCCCAAACAGTGTGAAGAACAGTGTTGTATTTTTAGTTTTCAGGAACAAAGCAGT
TTCCTTTAGAGGAGTAATGGAAAATGGGAAGCCAATAACAACCATGTGCGCAGTGATGGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAA
CACTTCCTGTTAACCCATCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCCTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACG
GATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGA
AACTGTAAGTGAAATTCTGGAGGGAGAGATGCTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCAT
GTTTTCAACCAGCAATTATTAGACTGAGGGAATTGTATGGAGTAAATTCCAATTGA

mRNA sequence

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Protein sequence

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LINKSTPSSIENFVLSTISPNSVKNSVVFLVFRNKAVSFRGVMENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIAT
DKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

Cucsat.G18161 (gene) of Cucumber (B10) v3 genome