; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G18240 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18240
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionBeta-galactosidase
Genome locationctg3345:3614151..3627848
RNA-Seq ExpressionCucsat.G18240
SyntenyCucsat.G18240
Gene Ontology termsGO:0006869 - lipid transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0048868 - pollen tube development (biological process)
GO:0090153 - regulation of sphingolipid biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005319 - lipid transporter activity (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034029.1 Beta-galactosidase [Cucumis melo var. makuwa]2.04e-5766.46Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK
        WGPSKV TSSGK WFVTFIDDHTR TWV+ ITDKS+V SIFQNFYHTI+TQF+TKI ILRSDNGREFQNHNLSEFL SKGIV Q+SCA    + G + E+
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK

Query:  PSS-----SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
         +      +RS  +S ++  PSYL  +AILIA +LINRM SR+LHL+TPL+  KES P T L+S
Subjt:  PSS-----SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

KAA0035089.1 Beta-galactosidase [Cucumis melo var. makuwa]8.08e-5867.28Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK
        WGPSKV TSSGK WFVTFIDDHTR TWV+ ITDKS+V SIFQNFYHTI+TQF+TKI ILRSDNGREFQNHNLSEFL SKGIV Q+SCA    + G + E+
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK

Query:  PSSSR---SSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
         +      + S+  +   PSYL  DAIL A +LINRM SR+LHL+TPL+  KESYP T LIS
Subjt:  PSSSR---SSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

KAA0043638.1 Beta-galactosidase [Cucumis melo var. makuwa]8.49e-6066.88Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWLCE
        WGPSKV TSSGK WFVTFIDDHTR TWV+ ITDKS+VS+IFQNFYHTIETQF+ KI IL SDNGREFQNHNLSEFL SKGIV  +SCA T  N++     
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWLCE

Query:  KPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
        +     + S+  +   PSYL  DAIL A +LINRM SR+LHL+TPLE  KESYP T L+S
Subjt:  KPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

KAA0060527.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.37e-6067.9Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWL--
        WGPSKV T SGK WFVTFIDDHTR TWV+ ITDKS+VSSIFQNFYHTIETQF+TKI ILRSDNGREFQNHNLSEFL SKGIV  +SCA T  N +     
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWL--

Query:  CEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
        C     +RS  +S ++  P+YL  DAIL   +LINRM SR+LHL+TPL   KESYP THL+S
Subjt:  CEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

KAA0068166.1 Beta-galactosidase [Cucumis melo var. makuwa]4.07e-5857.81Show/hide
Query:  MFVFGENNIGFHFLNSH---DHSLLSIVM--FWGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQ
        M+V G NNIG  F ++      +L +++    WGPSKV TS  K WFVTFIDDHTR TWV+ ITDK +VSSIFQNFYHTIETQF TKI ILRS NGREFQ
Subjt:  MFVFGENNIGFHFLNSH---DHSLLSIVM--FWGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQ

Query:  NHNLSEFLISKGIVPQSSCATLLNKMGWLCEKPSS--SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLI
        NHNL+EFL SKGIV Q+SCA    + G    K       + S+  +   P YL  DAIL A  LINRM SR+LHL+ PL   KESYP T L+
Subjt:  NHNLSEFLISKGIVPQSSCATLLNKMGWLCEKPSS--SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLI

TrEMBL top hitse value%identityAlignment
A0A5A7SXY5 Beta-galactosidase9.86e-5866.46Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK
        WGPSKV TSSGK WFVTFIDDHTR TWV+ ITDKS+V SIFQNFYHTI+TQF+TKI ILRSDNGREFQNHNLSEFL SKGIV Q+SCA    + G + E+
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK

Query:  PSS-----SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
         +      +RS  +S ++  PSYL  +AILIA +LINRM SR+LHL+TPL+  KES P T L+S
Subjt:  PSS-----SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

A0A5A7T161 Beta-galactosidase3.91e-5867.28Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK
        WGPSKV TSSGK WFVTFIDDHTR TWV+ ITDKS+V SIFQNFYHTI+TQF+TKI ILRSDNGREFQNHNLSEFL SKGIV Q+SCA    + G + E+
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLLNKMGWLCEK

Query:  PSSSR---SSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
         +      + S+  +   PSYL  DAIL A +LINRM SR+LHL+TPL+  KESYP T LIS
Subjt:  PSSSR---SSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

A0A5A7TLC6 Beta-galactosidase4.11e-6066.88Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWLCE
        WGPSKV TSSGK WFVTFIDDHTR TWV+ ITDKS+VS+IFQNFYHTIETQF+ KI IL SDNGREFQNHNLSEFL SKGIV  +SCA T  N++     
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWLCE

Query:  KPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
        +     + S+  +   PSYL  DAIL A +LINRM SR+LHL+TPLE  KESYP T L+S
Subjt:  KPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

A0A5A7V153 Retrovirus-related Pol polyprotein from transposon TNT 1-942.60e-6067.9Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWL--
        WGPSKV T SGK WFVTFIDDHTR TWV+ ITDKS+VSSIFQNFYHTIETQF+TKI ILRSDNGREFQNHNLSEFL SKGIV  +SCA T  N +     
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCA-TLLNKMGWL--

Query:  CEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS
        C     +RS  +S ++  P+YL  DAIL   +LINRM SR+LHL+TPL   KESYP THL+S
Subjt:  CEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLIS

A0A5D3DC00 Beta-galactosidase1.97e-5857.81Show/hide
Query:  MFVFGENNIGFHFLNSH---DHSLLSIVM--FWGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQ
        M+V G NNIG  F ++      +L +++    WGPSKV TS  K WFVTFIDDHTR TWV+ ITDK +VSSIFQNFYHTIETQF TKI ILRS NGREFQ
Subjt:  MFVFGENNIGFHFLNSH---DHSLLSIVM--FWGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQ

Query:  NHNLSEFLISKGIVPQSSCATLLNKMGWLCEKPSS--SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLI
        NHNL+EFL SKGIV Q+SCA    + G    K       + S+  +   P YL  DAIL A  LINRM SR+LHL+ PL   KESYP T L+
Subjt:  NHNLSEFLISKGIVPQSSCATLLNKMGWLCEKPSS--SRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLI

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.0e-1333.12Show/hide
Query:  GPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGI-----VPQSSCATLLNKMGW
        GP    T   K +FV F+D  T +   + I  KS V S+FQ+F    E  FN K+V L  DNGRE+ ++ + +F + KGI     VP +     LN +  
Subjt:  GPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGI-----VPQSSCATLLNKMGW

Query:  LCEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVL--HLRTPLEFFKESYPY
           +  + ++ ++            +A+L ATYLINR+ SR L    +TP E +    PY
Subjt:  LCEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVL--HLRTPLEFFKESYPY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-1127.75Show/hide
Query:  VFG-ENNIGFHFLNSHDHSLLSIVM--FWGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNL
        +FG ++ + F   +    ++L +V     GP ++ +  G  +FVTFIDD +R  WV+ +  K +V  +FQ F+  +E +   K+  LRSDNG E+ +   
Subjt:  VFG-ENNIGFHFLNSHDHSLLSIVM--FWGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNL

Query:  SEFLISKGIVPQSSC--ATLLNKMGWLCEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFF-KESYPYTHLISF
         E+  S GI  + +       N +     +    +  S+      P     +A+  A YLINR  S  L    P   +  +   Y+HL  F
Subjt:  SEFLISKGIVPQSSC--ATLLNKMGWLCEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFF-KESYPYTHLISF

P25384 Transposon Ty2-C Gag-Pol polyprotein3.7e-0724.48Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVS--SIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLL--NKMGW
        +GP      S   +F++F D+ TRF WV+ + D+ + S  ++F +    I+ QFN ++++++ D G E+ N  L +F  ++GI   ++C T    ++   
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVS--SIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLL--NKMGW

Query:  LCEKPSSSRSSSVSYAIY---FPSYLCVDAILIATYLINRMLS
        + E+ + +  +     ++    P++L   A+  +T + N ++S
Subjt:  LCEKPSSSRSSSVSYAIY---FPSYLCVDAILIATYLINRMLS

Q12472 Transposon Ty2-DR1 Gag-Pol polyprotein3.7e-0724.48Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVS--SIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLL--NKMGW
        +GP      S   +F++F D+ TRF WV+ + D+ + S  ++F +    I+ QFN ++++++ D G E+ N  L +F  ++GI   ++C T    ++   
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVS--SIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLL--NKMGW

Query:  LCEKPSSSRSSSVSYAIY---FPSYLCVDAILIATYLINRMLS
        + E+ + +  +     ++    P++L   A+  +T + N ++S
Subjt:  LCEKPSSSRSSSVSYAIY---FPSYLCVDAILIATYLINRMLS

Q12491 Transposon Ty2-B Gag-Pol polyprotein3.7e-0724.48Show/hide
Query:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVS--SIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLL--NKMGW
        +GP      S   +F++F D+ TRF WV+ + D+ + S  ++F +    I+ QFN ++++++ D G E+ N  L +F  ++GI   ++C T    ++   
Subjt:  WGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVS--SIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFLISKGIVPQSSCATLL--NKMGW

Query:  LCEKPSSSRSSSVSYAIY---FPSYLCVDAILIATYLINRMLS
        + E+ + +  +     ++    P++L   A+  +T + N ++S
Subjt:  LCEKPSSSRSSSVSYAIY---FPSYLCVDAILIATYLINRMLS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTTCTTTATCTTGTGATGTTTGTATTCGGGGAAAACAACATCGGGTTTCATTTCCTAAACTCACATGACCATTCACTCTTATCCATAGTGATGTTTTGGGGTCC
ATCCAAAGTCGCAACCTCTTCTGGGAAAGGGTGGTTTGTAACTTTCATTGATGATCATACCCGTTTTACCTGGGTCTTCTTTATCACAGATAAATCTAAAGTTTCCTCTA
TTTTCCAAAACTTCTATCACACCATTGAAACGCAATTCAATACAAAAATTGTAATTCTTCGAAGTGATAATGGGCGGGAATTTCAAAACCATAATCTTAGTGAGTTTCTA
ATCTCGAAGGGGATTGTTCCCCAAAGCTCATGTGCTACACTCCTCAACAAAATGGGGTGGTTGTGTGAAAAACCGTCATCTTCTAGAAGTAGCTCGGTCTCTTATGCTAT
CTACTTTCCTTCATACTTGTGTGTAGATGCCATTCTTATCGCAACTTATTTAATCAATAGGATGCTTTCTCGTGTCCTCCACCTTCGAACTCCCTTAGAGTTTTTTAAGG
AGTCCTACCCTTATACTCATCTAATTTCATTCCCTTTCGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTTCTTTATCTTGTGATGTTTGTATTCGGGGAAAACAACATCGGGTTTCATTTCCTAAACTCACATGACCATTCACTCTTATCCATAGTGATGTTTTGGGGTCC
ATCCAAAGTCGCAACCTCTTCTGGGAAAGGGTGGTTTGTAACTTTCATTGATGATCATACCCGTTTTACCTGGGTCTTCTTTATCACAGATAAATCTAAAGTTTCCTCTA
TTTTCCAAAACTTCTATCACACCATTGAAACGCAATTCAATACAAAAATTGTAATTCTTCGAAGTGATAATGGGCGGGAATTTCAAAACCATAATCTTAGTGAGTTTCTA
ATCTCGAAGGGGATTGTTCCCCAAAGCTCATGTGCTACACTCCTCAACAAAATGGGGTGGTTGTGTGAAAAACCGTCATCTTCTAGAAGTAGCTCGGTCTCTTATGCTAT
CTACTTTCCTTCATACTTGTGTGTAGATGCCATTCTTATCGCAACTTATTTAATCAATAGGATGCTTTCTCGTGTCCTCCACCTTCGAACTCCCTTAGAGTTTTTTAAGG
AGTCCTACCCTTATACTCATCTAATTTCATTCCCTTTCGTGTAG
Protein sequenceShow/hide protein sequence
MSLLYLVMFVFGENNIGFHFLNSHDHSLLSIVMFWGPSKVATSSGKGWFVTFIDDHTRFTWVFFITDKSKVSSIFQNFYHTIETQFNTKIVILRSDNGREFQNHNLSEFL
ISKGIVPQSSCATLLNKMGWLCEKPSSSRSSSVSYAIYFPSYLCVDAILIATYLINRMLSRVLHLRTPLEFFKESYPYTHLISFPFV