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Cucsat.G18311 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18311
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrotrans_gag domain-containing protein
Genome locationctg3345:1854821..1859717
RNA-Seq ExpressionCucsat.G18311
SyntenyCucsat.G18311
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY98609.1 haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Actinidia rufa]5.87e-5260.84Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY
        M I LSVKNK+GF+DG+IT+P     +LL +WIRNNN+VISWILN VSK ISASI+FS SA  IW+DLK+RFQ+ N PRIFQL+R L    Q+Q  + +Y
Subjt:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY

Query:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
        FTK KT+ +ELN YRPAC+CG  TC G+K++    QMEY+M F
Subjt:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

KAA8542446.1 hypothetical protein F0562_023418 [Nyssa sinensis]1.47e-5462.24Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY
        M I LSVKNK+GFVDG+I  P     DL+ +WIRNNNIVISWILN VSK ISASI+F+ SAR IW+DL++RFQ++N PRIFQLKR L  L Q Q S+ IY
Subjt:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY

Query:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
        FTK KT+ +EL+ YRP C+CG  +C G+K + D  QMEY+M F
Subjt:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

XP_022154973.1 uncharacterized protein LOC111022117 [Momordica charantia]5.83e-5256.43Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPTRDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYFTK
        MTI LS+KNK+GF++G++ +P  DLLP WIRN ++VI+W LN VSKPISAS++F+NS   IW+DLK+RFQ +N P+IFQL+R LATL+Q+Q S+ +Y+TK
Subjt:  MTIGLSVKNKIGFVDGTITRPTRDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYFTK

Query:  FKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
         K L DE  +YRP C CG+ +C G + +  F+Q E+LM F
Subjt:  FKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

XP_022888913.1 uncharacterized protein LOC111404319 [Olea europaea var. sylvestris]4.50e-5259.15Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPTR--DLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYF
        MTI LSVKNKI F++G+I++P    DLL AWIRNNN+VISWILN VSK ISASI+++ S + IW DLKER+Q+KNAPRIFQL++ L    Q Q S+ +YF
Subjt:  MTIGLSVKNKIGFVDGTITRPTR--DLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYF

Query:  TKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
        TK KT+ +EL+ +RP C CG   C G K++AD+  MEY+M F
Subjt:  TKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

XP_022891830.1 uncharacterized protein LOC111406673 [Olea europaea var. sylvestris]7.27e-5361.15Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPTR--DLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYF
        M I LSVKNK+GF+DG+I+RP    DLL +WIRNNNIVISWILN VSK I+ASI++S SA  IW DLKERFQ++N PRIFQLKR L   +Q Q S  +YF
Subjt:  MTIGLSVKNKIGFVDGTITRPTR--DLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYF

Query:  TKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYL
        TK K + +EL+ YRP+C+CG   C G K++A+F  MEY+
Subjt:  TKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYL

TrEMBL top hitse value%identityAlignment
A0A2Z7D4G6 Uncharacterized protein2.23e-5160.84Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPTRD---LLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY
        M I LSVKNKIGF+DG+I +P      LL +W RNNNIVISWILN VSK ISASI+F+ SA  IW+DLK+RFQ+ N PRIFQL+R L  L+Q Q S+  Y
Subjt:  MTIGLSVKNKIGFVDGTITRPTRD---LLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY

Query:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
        FTK K L DEL+ +RP C CG  TC G+KE+    QMEY+M F
Subjt:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

A0A5J5BIH5 Uncharacterized protein7.10e-5562.24Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY
        M I LSVKNK+GFVDG+I  P     DL+ +WIRNNNIVISWILN VSK ISASI+F+ SAR IW+DL++RFQ++N PRIFQLKR L  L Q Q S+ IY
Subjt:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY

Query:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
        FTK KT+ +EL+ YRP C+CG  +C G+K + D  QMEY+M F
Subjt:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

A0A5J5BKC2 Uncharacterized protein2.43e-5161.54Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY
        M I LSVKNK+GFVDG+I  P     +LL +WIRNNNIVISWILN VSK ISASI+F+ SAR IW+DL++RFQ++N PRIFQLKR L  L Q Q S+ IY
Subjt:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY

Query:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
        FTK KT+ +EL+ YR  C+CG  +C G+K + D  QMEY+M F
Subjt:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

A0A6J1DLQ9 uncharacterized protein LOC1110221172.82e-5256.43Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPTRDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYFTK
        MTI LS+KNK+GF++G++ +P  DLLP WIRN ++VI+W LN VSKPISAS++F+NS   IW+DLK+RFQ +N P+IFQL+R LATL+Q+Q S+ +Y+TK
Subjt:  MTIGLSVKNKIGFVDGTITRPTRDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYFTK

Query:  FKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
         K L DE  +YRP C CG+ +C G + +  F+Q E+LM F
Subjt:  FKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

A0A7J0FKC9 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein2.84e-5260.84Show/hide
Query:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY
        M I LSVKNK+GF+DG+IT+P     +LL +WIRNNN+VISWILN VSK ISASI+FS SA  IW+DLK+RFQ+ N PRIFQL+R L    Q+Q  + +Y
Subjt:  MTIGLSVKNKIGFVDGTITRPT---RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIY

Query:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF
        FTK KT+ +ELN YRPAC+CG  TC G+K++    QMEY+M F
Subjt:  FTKFKTLIDELNTYRPACNCGTYTCDGLKEMADFLQMEYLMDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2.9e-1732.86Show/hide
Query:  LSVKNKIGFVDGTITRPT--RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYFTKFK
        L V  K GF+DGT+ +P     L   W + N +V+ W++N ++  +  S++++ +A  +W DL+  F      +I+QL+R LATL Q  DS+  YF K  
Subjt:  LSVKNKIGFVDGTITRPT--RDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYFTKFK

Query:  TLIDELNTYR--PACNCGTYTCDGLKEMADFLQMEYLMDF
         +  EL+ Y   P C CG   C+  K   +  + E   +F
Subjt:  TLIDELNTYR--PACNCGTYTCDGLKEMADFLQMEYLMDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATTGGACTCTCTGTGAAGAATAAAATCGGCTTCGTTGATGGAACTATCACACGACCAACCAGAGATCTCCTTCCAGCTTGGATCAGAAATAACAACATTGTTAT
TTCTTGGATATTAAACTTAGTCTCTAAACCCATCTCAGCCAGTATTCTCTTCTCAAACTCTGCAAGAACAATATGGGTAGACCTCAAGGAAAGATTCCAAAAGAAGAATG
CACCAAGGATATTTCAATTGAAACGATCCCTGGCAACACTGTCACAGAACCAAGACTCCATTGGTATCTATTTTACTAAGTTCAAGACTTTGATTGATGAATTGAATACA
TACAGACCAGCCTGCAACTGTGGAACTTATACTTGTGATGGCCTAAAAGAAATGGCAGACTTCCTTCAGATGGAATATCTCATGGATTTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCATTGGACTCTCTGTGAAGAATAAAATCGGCTTCGTTGATGGAACTATCACACGACCAACCAGAGATCTCCTTCCAGCTTGGATCAGAAATAACAACATTGTTAT
TTCTTGGATATTAAACTTAGTCTCTAAACCCATCTCAGCCAGTATTCTCTTCTCAAACTCTGCAAGAACAATATGGGTAGACCTCAAGGAAAGATTCCAAAAGAAGAATG
CACCAAGGATATTTCAATTGAAACGATCCCTGGCAACACTGTCACAGAACCAAGACTCCATTGGTATCTATTTTACTAAGTTCAAGACTTTGATTGATGAATTGAATACA
TACAGACCAGCCTGCAACTGTGGAACTTATACTTGTGATGGCCTAAAAGAAATGGCAGACTTCCTTCAGATGGAATATCTCATGGATTTTCAGTAA
Protein sequenceShow/hide protein sequence
MTIGLSVKNKIGFVDGTITRPTRDLLPAWIRNNNIVISWILNLVSKPISASILFSNSARTIWVDLKERFQKKNAPRIFQLKRSLATLSQNQDSIGIYFTKFKTLIDELNT
YRPACNCGTYTCDGLKEMADFLQMEYLMDFQ