CuGenDBv2

Gene ID	Cucsat.G185
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Genome location	ctg1:3926539..3931500
RNA-Seq Expression	Cucsat.G185
Synteny	Cucsat.G185
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003746 - translation elongation factor activity (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

6.61e-77

82.19

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE
        +GLEFL EDD K  L K  R N++GDDD DE++D+DD+DDEEY+VE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE

XP_008449133.1 PREDICTED: 30S ribosomal protein S6 [Cucumis melo]

1.88e-87

89.54

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDDDK+G  + SRLNLMGD  ED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

XP_011650517.1 uncharacterized protein LOC101218568 [Cucumis sativus]

1.09e-100

100

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

1.14e-77

82.88

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE
        +GLEFL EDD KN L K  R  ++GDDD DE++D+DDDDDEEY+VE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

1.39e-78

83.56

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE
        +GLEFL EDD KN L K  R N++GDDD DE++D+DDDDDEEY+VE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X6 Uncharacterized protein

5.30e-101

100

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

A0A1S3BLC8 30S ribosomal protein S6

9.12e-88

89.54

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDDDK+G  + SRLNLMGD  ED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

A0A6J1CN79 uncharacterized protein LOC111013137

1.26e-76

80.39

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDD K  L K  R+ +MGDDD DE ED+DDD+DEEY+VE +++K E
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

A0A6J1FEF6 uncharacterized protein LOC111443208

5.54e-78

82.88

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE
        +GLEFL EDD KN L K  R  ++GDDD DE++D+DDDDDEEY+VE
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVE

A0A6J1KXT7 uncharacterized protein LOC111498530

7.93e-75

82.14

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDD
        +GLEFL EDD KN L K  R +++GDDD DE++D+DDDDD
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.4e-38

60.43

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M L KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDD
             +G+ + ++ L   +RL   G   +    DEDD++
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.1e-33

56.83

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M L KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDD
             +G+ + ++ L   +RL   G   +    DEDD++
Subjt:  FGLEFLGEDDDKNGLEKLSRLNLMGDDDEDEDEDEDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATGTTATGTTTTTGATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAATGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ACATGAACAAGGAGTTGTTTTACTTAAACAAGGAGGATCGGTTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATTTGGCCTGGAATTCCTTGGCGAAGATGAT
GACAAGAATGGACTTGAAAAATTAAGTCGACTTAACTTGATGGGTGATGACGATGAAGATGAAGATGAAGATGAAGACGACGACGATGATGAAGAATACAATGTGGAACC
TGACGATACGAAAGCAGAGTGA

mRNA sequence

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Protein sequence

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MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQFGLEFLGEDD
DKNGLEKLSRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

Cucsat.G185 (gene) of Cucumber (B10) v3 genome