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Cucsat.G18798 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18798
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionU6 snRNA-associated Sm-like protein LSm1
Genome locationctg3412:409007..410361
RNA-Seq ExpressionCucsat.G18798
SyntenyCucsat.G18798
Gene Ontology termsGO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA (biological process)
GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0000932 - P-body (cellular component)
GO:0016020 - membrane (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0000339 - RNA cap binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR044642 - U6 snRNA-associated Sm-like protein Lsm1/8


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650881.1 hypothetical protein Csa_002293 [Cucumis sativus]7.28e-3392.31Show/hide
Query:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLL
        MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDR  + +L
Subjt:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLL

XP_022980750.1 sm-like protein LSM1B [Cucurbita maxima]9.76e-1753.42Show/hide
Query:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLVISF
        I  YLDRK+L+LLLDGR I+G + +FD YGN+++E+AFERI   NQY D PMG  L++   N + IG++ +SF
Subjt:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLVISF

XP_031738469.1 uncharacterized protein LOC116402709 isoform X1 [Cucumis sativus]1.70e-3292.31Show/hide
Query:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLL
        MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDR  + +L
Subjt:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLL

XP_031738470.1 uncharacterized protein LOC116402709 isoform X2 [Cucumis sativus]4.13e-5659.88Show/hide
Query:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYS
        MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNY                   
Subjt:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYS

Query:  DNPMGRFLIIFSKNIVLIGKLVISFLSHLNFITISPLLFLFLVSVNFLISGAPVVPNTSTYHSCLTPSDSNC
                                                          GAPVVPNTSTYHSCLTPSDSNC
Subjt:  DNPMGRFLIIFSKNIVLIGKLVISFLSHLNFITISPLLFLFLVSVNFLISGAPVVPNTSTYHSCLTPSDSNC

XP_031738471.1 uncharacterized protein LOC116402709 isoform X3 [Cucumis sativus]4.00e-5659.88Show/hide
Query:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYS
        MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNY                   
Subjt:  MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYS

Query:  DNPMGRFLIIFSKNIVLIGKLVISFLSHLNFITISPLLFLFLVSVNFLISGAPVVPNTSTYHSCLTPSDSNC
                                                          GAPVVPNTSTYHSCLTPSDSNC
Subjt:  DNPMGRFLIIFSKNIVLIGKLVISFLSHLNFITISPLLFLFLVSVNFLISGAPVVPNTSTYHSCLTPSDSNC

TrEMBL top hitse value%identityAlignment
A0A1S4C6Q4 U6 snRNA-associated Sm-like protein LSm11.43e-1657.58Show/hide
Query:  EYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGK
         YLDRK+L+LL DGR +LG LRSFD Y NI+LE   ER++VGN Y D P+G + +I  +N+VLIG+
Subjt:  EYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGK

A0A6A3BP95 U6 snRNA-associated Sm-like protein LSm11.24e-1657.58Show/hide
Query:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        YLD+K+LVLL DGR +LG LRSFD + N++LE A ER++VGN Y D P+G + +I  +N+VLIG+L
Subjt:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

A0A6J1IXE4 sm-like protein LSM1B4.73e-1753.42Show/hide
Query:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLVISF
        I  YLDRK+L+LLLDGR I+G + +FD YGN+++E+AFERI   NQY D PMG  L++   N + IG++ +SF
Subjt:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLVISF

R0G878 U6 snRNA-associated Sm-like protein LSm11.01e-1657.35Show/hide
Query:  EYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLV
         YLDRK+LVLL DGR ++G LRSFD + N +LE A ER++VG QY D P+G + +I  +N+VLIG+LV
Subjt:  EYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLV

V4UTY7 U6 snRNA-associated Sm-like protein LSm15.34e-1757.14Show/hide
Query:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLVISF
        YLD+K+LVLL DGR +LG LRSFD + N++LE A ERI+VG+ Y D P+G + +I  +N+VLIG+LV  F
Subjt:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKLVISF

SwissProt top hitse value%identityAlignment
O15116 U6 snRNA-associated Sm-like protein LSm18.1e-1141.67Show/hide
Query:  IPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        +P T  LI D         +D+K LVLL DGR+++G+LRS D + N++L    ERI VG +Y D P G F ++  +N+VL+G++
Subjt:  IPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

Q5E9Z8 U6 snRNA-associated Sm-like protein LSm18.1e-1141.67Show/hide
Query:  IPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        +P T  LI D         +D+K LVLL DGR+++G+LRS D + N++L    ERI VG +Y D P G F ++  +N+VL+G++
Subjt:  IPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

Q8LFL8 Sm-like protein LSM1B2.7e-1455.07Show/hide
Query:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        +  YLDRK+LVLL DGR ++G LRSFD + N +LE A ER++VG QY D P+G + +I  +N+VLIG+L
Subjt:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

Q8VC85 U6 snRNA-associated Sm-like protein LSm18.1e-1141.67Show/hide
Query:  IPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        +P T  LI D         +D+K LVLL DGR+++G+LRS D + N++L    ERI VG +Y D P G F ++  +N+VL+G++
Subjt:  IPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

Q945P8 Sm-like protein LSM1A4.6e-1456.06Show/hide
Query:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        YLD+K+LVLL DGR ++G LRSFD + N +LE A+ER++VG+ Y D P+G + II  +N+VLIG+L
Subjt:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

Arabidopsis top hitse value%identityAlignment
AT1G19120.1 Small nuclear ribonucleoprotein family protein3.3e-1556.06Show/hide
Query:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        YLD+K+LVLL DGR ++G LRSFD + N +LE A+ER++VG+ Y D P+G + II  +N+VLIG+L
Subjt:  YLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

AT3G14080.1 Small nuclear ribonucleoprotein family protein1.9e-1555.07Show/hide
Query:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        +  YLDRK+LVLL DGR ++G LRSFD + N +LE A ER++VG QY D P+G + +I  +N+VLIG+L
Subjt:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL

AT3G14080.2 Small nuclear ribonucleoprotein family protein1.9e-1555.07Show/hide
Query:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL
        +  YLDRK+LVLL DGR ++G LRSFD + N +LE A ER++VG QY D P+G + +I  +N+VLIG+L
Subjt:  IREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLIIFSKNIVLIGKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGGAGAGAGTTATTTATAAGGTTAATTAGAGTGAGAGTTCGAGGAAATATCATTCCATGTGATCGAATTGAGAGACTGACAATGAATTTCCAAAACCAAATACG
TATTCCACAAACTGTTGGGTTAATTAGAGACCTTGGCCTTTTCTATATTCGCGAATATCTTGACCGCAAAGTACTTGTACTGCTTCTTGATGGCCGATCTATCCTTGGCT
ATCTGCGTTCCTTCGATAATTATGGGAATATCATTCTTGAGACTGCTTTCGAAAGAATTGTTGTTGGCAATCAGTATTCTGATAACCCCATGGGTCGTTTTTTGATTATT
TTTTCCAAGAATATTGTTCTAATTGGGAAACTCGTAATCTCGTTTCTCTCCCACCTTAATTTCATTACAATTTCCCCCCTCCTTTTCTTGTTTCTAGTCTCAGTTAACTT
CTTAATTTCAGGAGCCCCGGTTGTACCAAATACCTCCACATATCACTCCTGTCTCACTCCTTCAGATTCTAATTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGGAGAGAGTTATTTATAAGGTTAATTAGAGTGAGAGTTCGAGGAAATATCATTCCATGTGATCGAATTGAGAGACTGACAATGAATTTCCAAAACCAAATACG
TATTCCACAAACTGTTGGGTTAATTAGAGACCTTGGCCTTTTCTATATTCGCGAATATCTTGACCGCAAAGTACTTGTACTGCTTCTTGATGGCCGATCTATCCTTGGCT
ATCTGCGTTCCTTCGATAATTATGGGAATATCATTCTTGAGACTGCTTTCGAAAGAATTGTTGTTGGCAATCAGTATTCTGATAACCCCATGGGTCGTTTTTTGATTATT
TTTTCCAAGAATATTGTTCTAATTGGGAAACTCGTAATCTCGTTTCTCTCCCACCTTAATTTCATTACAATTTCCCCCCTCCTTTTCTTGTTTCTAGTCTCAGTTAACTT
CTTAATTTCAGGAGCCCCGGTTGTACCAAATACCTCCACATATCACTCCTGTCTCACTCCTTCAGATTCTAATTGCTAG
Protein sequenceShow/hide protein sequence
MDGRELFIRLIRVRVRGNIIPCDRIERLTMNFQNQIRIPQTVGLIRDLGLFYIREYLDRKVLVLLLDGRSILGYLRSFDNYGNIILETAFERIVVGNQYSDNPMGRFLII
FSKNIVLIGKLVISFLSHLNFITISPLLFLFLVSVNFLISGAPVVPNTSTYHSCLTPSDSNC