; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G18825 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18825
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionpentatricopeptide repeat-containing protein At3g25210, mitochondrial
Genome locationctg3412:1036507..1038625
RNA-Seq ExpressionCucsat.G18825
SyntenyCucsat.G18825
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144398.1 pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Cucumis sativus]4.28e-99100Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

XP_016902527.1 PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Cucumis melo]3.06e-8490.48Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        ML KFLRPI+SS R PHLFSSPFQSLLNPILPSHLH RFLCSLSPPSSA LPPQ+SDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDV EALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTA QRGYKHN LTYLTIIKILI  RR HLA+TLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

XP_022995354.1 pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Cucurbita maxima]6.14e-7078.23Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        M+ KFLRP+LS+ R+ +  SSPFQSL NPILP +LH R LCS SP  S +LP Q  +N +LPI KVR+QTPLEKQFE+WVQKLKPGFSPSDVNEALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTAQQRGYKHN LTYLTIIKILI RRR HLAETLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

XP_023532709.1 pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Cucurbita pepo subsp. pepo]2.02e-7077.48Show/hide
Query:  RRHTMLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEAL
        RR TM+ KFLRPILS+ R+ +  S PFQSL NP+LP +LH R LCS SP  S +LPPQ  +N +LPI KVR+QTPLEKQFE+W+QKLKPGFSPSDVNEAL
Subjt:  RRHTMLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEAL

Query:  QAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        QAQSDPDLALDLFRWTAQQRGYKHN LTYLTIIKILI RRR HLAETLVEE
Subjt:  QAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

XP_038888802.1 pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Benincasa hispida]1.42e-8187.76Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        ML KFLRPILS+ RR H FSSPFQSLLNPILPSHLH RFLCS  PPSS ++P QNSDNLNLPIPK+R+QTPLEKQFE+WVQKLKPGFSPSDVNEALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTAQQRGYKHN LTYLTIIKILI RRR HLAETLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

TrEMBL top hitse value%identityAlignment
A0A0A0L8U7 Uncharacterized protein2.07e-99100Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

A0A1S4E2S7 pentatricopeptide repeat-containing protein At3g25210, mitochondrial1.48e-8490.48Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        ML KFLRPI+SS R PHLFSSPFQSLLNPILPSHLH RFLCSLSPPSSA LPPQ+SDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDV EALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTA QRGYKHN LTYLTIIKILI  RR HLA+TLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

A0A5D3DR42 Pentatricopeptide repeat-containing protein1.48e-8490.48Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        ML KFLRPI+SS R PHLFSSPFQSLLNPILPSHLH RFLCSLSPPSSA LPPQ+SDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDV EALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTA QRGYKHN LTYLTIIKILI  RR HLA+TLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

A0A6J1ETB4 pentatricopeptide repeat-containing protein At3g25210, mitochondrial3.59e-6876.87Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        M+ KFLRP+LS+ R+ +  SS FQSL NPILP +LH R LCS SP  S +LPPQ  +N +LPI KVR+QTPLEKQFE+W+QKLKPGFSPSDVNEALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTAQQRGYKHN LTYLTIIKILI RR+ HLAETLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

A0A6J1K5G5 pentatricopeptide repeat-containing protein At3g25210, mitochondrial2.97e-7078.23Show/hide
Query:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS
        M+ KFLRP+LS+ R+ +  SSPFQSL NPILP +LH R LCS SP  S +LP Q  +N +LPI KVR+QTPLEKQFE+WVQKLKPGFSPSDVNEALQAQS
Subjt:  MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQS

Query:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        DPDLALDLFRWTAQQRGYKHN LTYLTIIKILI RRR HLAETLVEE
Subjt:  DPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

SwissProt top hitse value%identityAlignment
Q9LSF5 Pentatricopeptide repeat-containing protein At3g25210, mitochondrial3.0e-2650.36Show/hide
Query:  ILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDL
        +L+S  R    S PF S       +HL   F    S P S   P            ++RT+TPLE QFE+W+Q LKPGF+ SDV  AL+AQSDPDLALD+
Subjt:  ILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDL

Query:  FRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        FRWTAQQRGYKHNH  Y T+IK  I  +R +  ETL+EE
Subjt:  FRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

Q9ZUY1 Pentatricopeptide repeat-containing protein At2g27800, mitochondrial9.3e-0432.76Show/hide
Query:  QFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL
        +F   + KL P F+P ++ +A+  + DP L   LF W +QQ  + H + +Y   I+ L
Subjt:  QFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL

Arabidopsis top hitse value%identityAlignment
AT2G27800.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.6e-0532.76Show/hide
Query:  QFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL
        +F   + KL P F+P ++ +A+  + DP L   LF W +QQ  + H + +Y   I+ L
Subjt:  QFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL

AT3G25210.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-2750.36Show/hide
Query:  ILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDL
        +L+S  R    S PF S       +HL   F    S P S   P            ++RT+TPLE QFE+W+Q LKPGF+ SDV  AL+AQSDPDLALD+
Subjt:  ILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDL

Query:  FRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE
        FRWTAQQRGYKHNH  Y T+IK  I  +R +  ETL+EE
Subjt:  FRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEE

AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein1.0e-0533.33Show/hide
Query:  EKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL
        E +F+  + KL P F+P ++ +A+  + DP L   LF W +QQ  + H + +Y   I+ L
Subjt:  EKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL

AT5G27300.2 pentatricopeptide (PPR) repeat-containing protein1.0e-0533.33Show/hide
Query:  EKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL
        E +F+  + KL P F+P ++ +A+  + DP L   LF W +QQ  + H + +Y   I+ L
Subjt:  EKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAACCCACCCTCCACCATCCATTTTTCCCGTCATCTTCCACCGCCGTCACACCATGCTCAGCAAATTTCTCCGCCCGATTCTCTCATCTTGCCGCAGACCTCATCTCTT
TTCATCACCATTTCAATCACTTCTCAACCCCATTCTTCCATCCCATCTCCACCACCGTTTTCTCTGCTCCCTGTCCCCACCTTCATCCGCTCTTCTTCCTCCTCAAAACT
CCGACAACCTCAATCTCCCTATCCCAAAAGTTCGAACCCAAACTCCTCTCGAGAAGCAATTCGAATCATGGGTTCAGAAGCTCAAGCCCGGTTTCTCCCCTTCCGACGTC
AACGAGGCTCTACAAGCCCAATCCGACCCCGATCTCGCCCTCGACCTTTTCCGGTGGACGGCGCAGCAGCGCGGCTACAAACACAACCATTTAACCTATCTAACAATCAT
TAAGATCCTAATTTACCGCCGGAGATGCCACCTCGCTGAAACCCTAGTTGAAGAGCGTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATAACCCACCCTCCACCATCCATTTTTCCCGTCATCTTCCACCGCCGTCACACCATGCTCAGCAAATTTCTCCGCCCGATTCTCTCATCTTGCCGCAGACCTCATCTCTT
TTCATCACCATTTCAATCACTTCTCAACCCCATTCTTCCATCCCATCTCCACCACCGTTTTCTCTGCTCCCTGTCCCCACCTTCATCCGCTCTTCTTCCTCCTCAAAACT
CCGACAACCTCAATCTCCCTATCCCAAAAGTTCGAACCCAAACTCCTCTCGAGAAGCAATTCGAATCATGGGTTCAGAAGCTCAAGCCCGGTTTCTCCCCTTCCGACGTC
AACGAGGCTCTACAAGCCCAATCCGACCCCGATCTCGCCCTCGACCTTTTCCGGTGGACGGCGCAGCAGCGCGGCTACAAACACAACCATTTAACCTATCTAACAATCAT
TAAGATCCTAATTTACCGCCGGAGATGCCACCTCGCTGAAACCCTAGTTGAAGAGCGTCTTTAG
Protein sequenceShow/hide protein sequence
ITHPPPSIFPVIFHRRHTMLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQFESWVQKLKPGFSPSDV
NEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYRRRCHLAETLVEERL