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Cucsat.G18829 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18829
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionReverse transcriptase
Genome locationctg3412:1148098..1154486
RNA-Seq ExpressionCucsat.G18829
SyntenyCucsat.G18829
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068077.1 reverse transcriptase [Cucumis melo var. makuwa]1.43e-12195.83Show/hide
Query:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI
        LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPY GDDNPELEVDFQE MENFPQETQILPDETEAKTEESKEAQI NRENEMMKDLRK+ EESSI
Subjt:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI

Query:  SSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK
        SSRTESSPWSSPGSFSSREYN+NYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE KNLQKKEKMNGKL KGKKIQK
Subjt:  SSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK

KAE8650855.1 hypothetical protein Csa_001262 [Cucumis sativus]6.35e-74100Show/hide
Query:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI
        LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI
Subjt:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI

Query:  SSRTESSPWSSPGSFSSRE
        SSRTESSPWSSPGSFSSRE
Subjt:  SSRTESSPWSSPGSFSSRE

XP_004144391.1 uncharacterized protein LOC101214978 [Cucumis sativus]2.79e-12598.96Show/hide
Query:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI
        LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI
Subjt:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI

Query:  SSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK
        SSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE KNLQKKEKMNGK TKGKKIQK
Subjt:  SSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK

XP_016902526.1 PREDICTED: uncharacterized protein LOC103499217 [Cucumis melo]6.61e-12595.43Show/hide
Query:  MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLT
        MTQ FLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPY GDDNPELEVDFQE MENFPQETQILPDETEAKTEESKEAQI NRENEMMKDLRK+ 
Subjt:  MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLT

Query:  EESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK
        EESSISSRTESSPWSSPGSFSSREYN+NYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE KNLQKKEKMNGKL KGKKIQK
Subjt:  EESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK

XP_038887002.1 stress response protein NST1 [Benincasa hispida]4.25e-8673.39Show/hide
Query:  LRTRTPEEIHGF-PPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEV--DFQESMENFPQETQILPDET-----EAKTEESKEAQIGN----------
        LR RTPEE  GF PP+EELEAYKIVFETYTFG SEQ PYG DD+PE+EV  DFQE MENFP+E QIL +       E KTEE KEAQI N          
Subjt:  LRTRTPEEIHGF-PPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEV--DFQESMENFPQETQILPDET-----EAKTEESKEAQIGN----------

Query:  --------RENEMMKDLRKLTEESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNL
                 ENEMMKDLRK+TEESSISSRTESSPWSSPGSFSSREYN   +LGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYE SE K L
Subjt:  --------RENEMMKDLRKLTEESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNL

Query:  QKKEKMNGKLTKGKKIQK
        QK+ K+NGKL KGKKIQK
Subjt:  QKKEKMNGKLTKGKKIQK

TrEMBL top hitse value%identityAlignment
A0A0A0L955 Uncharacterized protein5.40e-13198.98Show/hide
Query:  MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLT
        MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLT
Subjt:  MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLT

Query:  EESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK
        EESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE KNLQKKEKMNGK TKGKKIQK
Subjt:  EESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK

A0A1S4E2S0 uncharacterized protein LOC1034992173.20e-12595.43Show/hide
Query:  MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLT
        MTQ FLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPY GDDNPELEVDFQE MENFPQETQILPDETEAKTEESKEAQI NRENEMMKDLRK+ 
Subjt:  MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLT

Query:  EESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK
        EESSISSRTESSPWSSPGSFSSREYN+NYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE KNLQKKEKMNGKL KGKKIQK
Subjt:  EESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK

A0A5D3DQW2 Reverse transcriptase6.91e-12295.83Show/hide
Query:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI
        LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPY GDDNPELEVDFQE MENFPQETQILPDETEAKTEESKEAQI NRENEMMKDLRK+ EESSI
Subjt:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSI

Query:  SSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK
        SSRTESSPWSSPGSFSSREYN+NYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE KNLQKKEKMNGKL KGKKIQK
Subjt:  SSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQK

A0A6J1E4P5 uncharacterized protein LOC1110260371.38e-5258.06Show/hide
Query:  LRTRTPEEIHGF---PPIEELEAYKIVFETYTFG---GSEQIPYGGD--DNPELEV--DFQESMENFPQETQILPDETEA--KTEES-------KEAQIG
        LR RTP+E+  F   P  EELEAY IVFETYTFG    +E+ PYGG   D PE+EV  D +E + NFP+  +ILP+      KTEE        KE +  
Subjt:  LRTRTPEEIHGF---PPIEELEAYKIVFETYTFG---GSEQIPYGGD--DNPELEV--DFQESMENFPQETQILPDETEA--KTEES-------KEAQIG

Query:  NRENEMMKDLRKLTEESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKE--K
        + ENE M   +   ++SSISSR+ESSPWSSPGSF  REY+   +LGSYGSMRKEKEWRRTLACKLFEERHN+EG+EGMDSLWETYE SE K  QK E  K
Subjt:  NRENEMMKDLRKLTEESSISSRTESSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKE--K

Query:  MNGKLTK---GKKIQKE
           KL+K   GKK Q+E
Subjt:  MNGKLTK---GKKIQKE

A0A6J1HI04 uncharacterized protein LOC1114638231.13e-5262.57Show/hide
Query:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGD-DNPELEVDFQESMENFPQETQILPD------ETEAKTEESKEAQIGNRE--NEMMKDL
        LR RTP+E     P+EELEAYKIVFE YTFG SEQ PY       E+EVDFQE ME+FP++ + LP+      E EAKTEE +EA+  NR+  +E+M DL
Subjt:  LRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGD-DNPELEVDFQESMENFPQETQILPD------ETEAKTEESKEAQIGNRE--NEMMKDL

Query:  RKLTEESSISSRTESSP-WSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKK
        +    ESS SSR+ESSP WSSPGSF  R+Y+   +LGSYGSMRKEKEWRRTLACKLFEERH+SE TEGMDSLWETYE  E  N + K
Subjt:  RKLTEESSISSRTESSP-WSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25130.1 unknown protein1.7e-1531.44Show/hide
Query:  GFPPIEELEAYKIVFETYTFGGSEQIPYGGDD--------NPELEVDFQESMENFPQETQILP------------DET-EAKTEESKEAQIGNRENEMMK
        GF  +EELEAYK+V E  +   + +     D+        + E  V    + E   ++ +I P            +ET + + EE +E ++ ++ + ++ 
Subjt:  GFPPIEELEAYKIVFETYTFGGSEQIPYGGDD--------NPELEVDFQESMENFPQETQILP------------DET-EAKTEESKEAQIGNRENEMMK

Query:  DLRKLTEESSISSRTESSPWSSPGSF-------------------SSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE
        +  + T+E S + + +    S+  S+                   +  E  +N +L S+GSMRKEKEWRRTLACKLFEERHN++  +GMD LWETYE   
Subjt:  DLRKLTEESSISSRTESSPWSSPGSF-------------------SSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSE

Query:  LKNLQKKE------KMNGKLTKGKKIQKE
         K  Q +E      K    + K K I+KE
Subjt:  LKNLQKKE------KMNGKLTKGKKIQKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACAAGCATTTTTGAGAACAAGAACACCAGAGGAAATCCATGGATTCCCCCCCATCGAAGAGCTTGAAGCTTATAAAATCGTCTTTGAAACCTACACTTTTGGTGG
CTCTGAACAAATCCCATATGGGGGGGATGACAATCCAGAACTTGAAGTAGATTTTCAAGAATCCATGGAGAATTTCCCTCAGGAAACCCAAATTCTCCCGGATGAAACTG
AAGCAAAAACAGAGGAATCAAAAGAAGCCCAAATCGGAAACAGAGAGAATGAGATGATGAAAGATTTGAGGAAACTGACAGAAGAATCATCAATATCTTCAAGAACAGAA
TCGAGTCCATGGAGTTCACCAGGGAGTTTCAGTAGTAGAGAGTATAATAATAATTATACATTAGGAAGTTATGGATCGATGAGGAAAGAGAAAGAATGGAGAAGAACACT
TGCTTGTAAGCTGTTTGAAGAGCGGCATAATTCAGAAGGAACAGAAGGAATGGATTCATTATGGGAAACATATGAGAACAGCGAATTAAAGAACTTACAGAAGAAAGAGA
AAATGAATGGGAAATTGACGAAAGGAAAGAAAATTCAAAAAGAAAACAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACACAAGCATTTTTGAGAACAAGAACACCAGAGGAAATCCATGGATTCCCCCCCATCGAAGAGCTTGAAGCTTATAAAATCGTCTTTGAAACCTACACTTTTGGTGG
CTCTGAACAAATCCCATATGGGGGGGATGACAATCCAGAACTTGAAGTAGATTTTCAAGAATCCATGGAGAATTTCCCTCAGGAAACCCAAATTCTCCCGGATGAAACTG
AAGCAAAAACAGAGGAATCAAAAGAAGCCCAAATCGGAAACAGAGAGAATGAGATGATGAAAGATTTGAGGAAACTGACAGAAGAATCATCAATATCTTCAAGAACAGAA
TCGAGTCCATGGAGTTCACCAGGGAGTTTCAGTAGTAGAGAGTATAATAATAATTATACATTAGGAAGTTATGGATCGATGAGGAAAGAGAAAGAATGGAGAAGAACACT
TGCTTGTAAGCTGTTTGAAGAGCGGCATAATTCAGAAGGAACAGAAGGAATGGATTCATTATGGGAAACATATGAGAACAGCGAATTAAAGAACTTACAGAAGAAAGAGA
AAATGAATGGGAAATTGACGAAAGGAAAGAAAATTCAAAAAGAAAACAGATGA
Protein sequenceShow/hide protein sequence
MTQAFLRTRTPEEIHGFPPIEELEAYKIVFETYTFGGSEQIPYGGDDNPELEVDFQESMENFPQETQILPDETEAKTEESKEAQIGNRENEMMKDLRKLTEESSISSRTE
SSPWSSPGSFSSREYNNNYTLGSYGSMRKEKEWRRTLACKLFEERHNSEGTEGMDSLWETYENSELKNLQKKEKMNGKLTKGKKIQKENR