; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G18968 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G18968
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionSplicing factor YJU2
Genome locationctg3473:89006..91331
RNA-Seq ExpressionCucsat.G18968
SyntenyCucsat.G18968
Gene Ontology termsGO:0000349 - generation of catalytic spliceosome for first transesterification step (biological process)
GO:0071006 - U2-type catalytic step 1 spliceosome (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007590 - Saf4/Yju2 protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583657.1 Splicing factor YJU2, partial [Cucurbita argyrosperma subsp. sororia]2.09e-8396.03Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV+GETYLGIQ+FRFYFKCTRCSAELTIKTDPQNSDY+V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDE SEKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

XP_004149128.1 splicing factor YJU2 [Cucumis sativus]4.19e-85100Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDEASEKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

XP_022159231.1 coiled-coil domain-containing protein 94 homolog [Momordica charantia]1.40e-8499.21Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDEASEKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

XP_031745804.1 LOW QUALITY PROTEIN: splicing factor YJU2-like [Cucumis sativus]3.40e-8499.21Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAEL IKTDPQNSDYVV
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDEASEKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

XP_038895471.1 splicing factor YJU2 [Benincasa hispida]3.51e-8499.21Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDEA EKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

TrEMBL top hitse value%identityAlignment
A0A0A0KL62 Splicing factor YJU21.15e-83100Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDEASEKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

A0A6J1E3A4 Splicing factor YJU26.79e-8599.21Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDEASEKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

A0A6J1EW00 Splicing factor YJU28.16e-8396Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV+GETYLGIQ+FRFYFKCTRCSAELTIKTDPQNSDY+V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKR
        ESGATRNFEPWREEDE SEKEKHKR
Subjt:  ESGATRNFEPWREEDEASEKEKHKR

A0A6J1EWD7 Splicing factor YJU21.53e-8396Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV+GETYLGIQ+FRFYFKCTRCSAELTIKTDPQNSDY+V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKR
        ESGATRNFEPWREEDE SEKEKHKR
Subjt:  ESGATRNFEPWREEDEASEKEKHKR

A0A6J1HYT1 Splicing factor YJU21.42e-8396.03Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDV+GETYLGIQ+FRFYFKCTRCSAELTIKTDPQNSDY+V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGATRNFEPWREEDE SEKEKHKRN
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

SwissProt top hitse value%identityAlignment
A8WHR3 Splicing factor YJU23.2e-4161.6Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RKE V  E YLG+ IFRFY KCTRC AE+T KTDP+N+DY +
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKR
        E GATRNF+  +  +E  +K + +R
Subjt:  ESGATRNFEPWREEDEASEKEKHKR

Q54WR5 Splicing factor YJU28.5e-4262.9Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKV++KYYPPDFDPSK+ +++  +    KV  MLPMSIRCNTCG YI +GTKFN++KE V  E YLGI+I+RF+ +C +C+AELTIKTDP+NS+YV 
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHK
        ESGATRN+EPW+E DE       K
Subjt:  ESGATRNFEPWREEDEASEKEKHK

Q9BW85 Splicing factor YJU21.4e-4162.4Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RKE V  E YLG+ IFRFY KCTRC AE+T KTDP+N+DY +
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWR---EEDEASEKEK
        E GATRNF+  +   EE++  +KE+
Subjt:  ESGATRNFEPWR---EEDEASEKEK

Q9D6J3 Splicing factor YJU21.4e-4162.4Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RKE V  E YLG+ IFRFY KCTRC AE+T KTDP+N+DY +
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWR---EEDEASEKEK
        E GATRNF+  +   EE++  +KE+
Subjt:  ESGATRNFEPWR---EEDEASEKEK

Q9P7C5 Splicing factor YJU21.3e-3455.64Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQN
        M ERKVLNKY PPD+DPS  P  ++ K Q     ++ VR+M P S+RC+TCG YIYKG KFN+RKE   GE Y  I I RFY +CTRC+AE+T  TDP++
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQN

Query:  SDYVVESGATRNFEPWREE--DEASEKEKHKRN
        +DY  ESGA+RN+EPW E+   E  E E  +RN
Subjt:  SDYVVESGATRNFEPWREE--DEASEKEKHKRN

Arabidopsis top hitse value%identityAlignment
AT1G17130.1 Family of unknown function (DUF572)3.4e-6285.71Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCT+CSAELT+KTDPQNSDY+V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHKRN
        ESGA+RN+EPWR EDE  +K+K KR+
Subjt:  ESGATRNFEPWREEDEASEKEKHKRN

AT1G17130.2 Family of unknown function (DUF572)4.2e-6081.2Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGE-------TYLGIQIFRFYFKCTRCSAELTIKTDP
        MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGNYIYKGTKFNSRKEDVIGE       TYLGIQIFRFYFKCT+CSAELT+KTDP
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGE-------TYLGIQIFRFYFKCTRCSAELTIKTDP

Query:  QNSDYVVESGATRNFEPWREEDEASEKEKHKRN
        QNSDY+VESGA+RN+EPWR EDE  +K+K KR+
Subjt:  QNSDYVVESGATRNFEPWREEDEASEKEKHKRN

AT2G29430.1 Family of unknown function (DUF572)2.6e-2259.21Show/hide
Query:  MMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATRNFEP
        + LPM ++CN C N + KGTKF SR EDVIGETYLGI+IFRF  +CT  S E+  +TDP+N+D+++ESGATR   P
Subjt:  MMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATRNFEP

AT2G32050.1 Family of unknown function (DUF572)3.2e-4464.71Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERK LNKYYPP+FDP ++PR+R+PKNQQ K+R M+P+ IRCNTCGNY+ +GTK N R+E+VIGETYLGI+I RFYFKC++C  EL +KTDP+NS YV 
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASE
        ESGAT  ++   EE++A +
Subjt:  ESGATRNFEPWREEDEASE

AT3G43250.1 Family of unknown function (DUF572)3.5e-4364.52Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV
        MGERK LNKYYPPDFDP K+ R+++PKNQQ K+R MLP+ +RCNTCGNY+ +GTKFN R+EDVI ETYLG++I RFY KCT+C AELTIKTDP+N  Y V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVV

Query:  ESGATRNFEPWREEDEASEKEKHK
        ESGA+  +    E+ E  +K+KH+
Subjt:  ESGATRNFEPWREEDEASEKEKHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCT
TCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTTAATTCTCGCAAGGAGGACGTCATTGGTGAGACATATTTGGGAATTCAAATTT
TTAGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTATGTTGTAGAATCAGGAGCCACACGTAATTTTGAACCA
TGGCGTGAGGAGGATGAAGCTTCTGAGAAGGAGAAACACAAAAGGAAT
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCT
TCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTTAATTCTCGCAAGGAGGACGTCATTGGTGAGACATATTTGGGAATTCAAATTT
TTAGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTATGTTGTAGAATCAGGAGCCACACGTAATTTTGAACCA
TGGCGTGAGGAGGATGAAGCTTCTGAGAAGGAGAAACACAAAAGGAAT
Protein sequenceShow/hide protein sequence
MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATRNFEP
WREEDEASEKEKHKRN