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Cucsat.G1908 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G1908
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRibonuclease H
Genome locationctg1002:4109781..4117361
RNA-Seq ExpressionCucsat.G1908
SyntenyCucsat.G1908
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043274.1 uncharacterized protein E6C27_scaffold110G001610 [Cucumis melo var. makuwa]2.59e-1464.41Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      KR EKK ++A  P+RR+ EGFDPK YKLM NAGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
KAA0047544.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]1.44e-1462.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+ EKK+++A+ P+RR  EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
KAA0048626.1 uncharacterized protein E6C27_scaffold12354G00010 [Cucumis melo var. makuwa]1.29e-1362.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+ EKK+++A+ P+RR  EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
KAA0050336.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.81e-1362.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+ EKK+++A+ P+RR  EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
KAA0061095.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]1.14e-1362.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+FEK +++A+ P+RR+ EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
TrEMBL top hitse value%identityAlignment
A0A5A7TX67 Gypsy-like retrotransposase6.99e-1562.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+ EKK+++A+ P+RR  EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
A0A5A7U320 Uncharacterized protein6.24e-1462.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+ EKK+++A+ P+RR  EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
A0A5A7U823 Ty3-gypsy retrotransposon protein1.36e-1362.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+ EKK+++A+ P+RR  EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
A0A5A7V5J8 Retrotransposon protein putative ty3-gypsy sub-class5.53e-1462.71Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      K+FEK +++A+ P+RR+ EGFDPKAYKLM  AGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
A0A5D3E0T3 Uncharacterized protein1.25e-1464.41Show/hide
Query:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
        ++ P TK      KR EKK ++A  P+RR+ EGFDPK YKLM NAGYDFTTRTELKSVK
Subjt:  YSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGGTGGACTTGCTCAAACTTTCTCTTTGTATTCCAAGCCGTATACGAAGAAGATCGACAACCTAAGAAAAAGATTTGAGAAAAAAAACGTAAAGGCATTCTTTCCAAA
AAGACGAATGACTGAGGGATTTGACCCAAAAGCATATAAATTGATGACAAATGCGGGTTATGACTTCACAACTCGCACTGAGCTTAAAAGCGTGAAATATTCGTTGAAAG
TTTTCACAATTGGAGCATACAAAATCATCGATCAAGAAGGATTACGAATTGGCCCAATCACCGATAAATTTCTCAAGAAGTTTTATGCTTAA
mRNA sequenceShow/hide mRNA sequence
TATGGTGGACTTGCTCAAACTTTCTCTTTGTATTCCAAGCCGTATACGAAGAAGATCGACAACCTAAGAAAAAGATTTGAGAAAAAAAACGTAAAGGCATTCTTTCCAAA
AAGACGAATGACTGAGGGATTTGACCCAAAAGCATATAAATTGATGACAAATGCGGGTTATGACTTCACAACTCGCACTGAGCTTAAAAGCGTGAAATATTCGTTGAAAG
TTTTCACAATTGGAGCATACAAAATCATCGATCAAGAAGGATTACGAATTGGCCCAATCACCGATAAATTTCTCAAGAAGTTTTATGCTTAA
Protein sequenceShow/hide protein sequence
YGGLAQTFSLYSKPYTKKIDNLRKRFEKKNVKAFFPKRRMTEGFDPKAYKLMTNAGYDFTTRTELKSVKYSLKVFTIGAYKIIDQEGLRIGPITDKFLKKFYA