CuGenDBv2

Gene ID	Cucsat.G19217
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Ribosomal protein
Genome location	ctg36:150980..152980
RNA-Seq Expression	Cucsat.G19217
Synteny	Cucsat.G19217
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.82e-55

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQEILPS S RTGLASL+PQK+EPTM +GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

XP_004150587.2 uncharacterized protein LOC101223220 [Cucumis sativus]

3.92e-96

100

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Query:  MEEESSIIHTLFSPSSQLLTVTLDPRVFAKKSFIFSLNLCINAMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEV
        MEEESSIIHTLFSPSSQLLTVTLDPRVFAKKSFIFSLNLCINAMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEV
Subjt:  MEEESSIIHTLFSPSSQLLTVTLDPRVFAKKSFIFSLNLCINAMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEV

Query:  KQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        KQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
Subjt:  KQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

XP_008443993.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo]

1.86e-60

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQEILPSQ  R GLASLIPQKNEPTM LGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

2.07e-57

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFASEGPSP LFSR+EVKQEILPS S RTGLASLIPQK+EPT   GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

2.94e-57

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFASEGP PSLFSR+EVKQE+LPS S RTGLASLIPQK+EPTM LGWRMGLASILLKK N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

8.99e-61

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQEILPSQ  R GLASLIPQKNEPTM LGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

A0A5A7U4L3 Ribosomal protein

8.99e-61

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQEILPSQ  R GLASLIPQKNEPTM LGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

A0A6J1CT08 Ribosomal protein

1.00e-57

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFASEGPSP LFSR+EVKQEILPS S RTGLASLIPQK+EPT   GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

A0A6J1EZS5 Ribosomal protein

1.94e-55

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTV+R+GRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQEILPS S RTGLASLIPQK+EPTM  GWRMGLASIL KK N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

2.75e-55

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQEILPS S RTGLASL+PQK+EPTM  GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

1.3e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

1.3e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

4.4e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

4.4e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Q03PY0 50S ribosomal protein L36

1.7e-09

73.68

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVK MCE C+ +KRKGRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

5.1e-30

64.08

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP Q +  GLASL+ ++  PT + GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

AT5G20180.2 Ribosomal protein L36

5.1e-30

64.08

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP Q +  GLASL+ ++  PT + GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

ATCG00760.1 ribosomal protein L36

4.2e-08

60.53

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MK+R+SV+K+CE CR ++R+GR+ + C SNP+HKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGGAAGAGGAAAGTTCCATAATCCATACTTTGTTTAGTCCTTCGTCTCAGCTGCTGACCGTCACTCTCGATCCGAGGGTATTTGCCAAGAAATCATTCATTTTTTCACT
TAACCTTTGCATCAACGCCATGAAAGTCCGTTCTTCGGTGAAAAAGATGTGCGAATTTTGTAGGACAGTGAAGCGTAAAGGCCGGGTATATATATACTGCTCATCTAATC
CCAAACACAAGCAACGCCAGGGCCTGTCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAACCGAGGTGAAGCAAGAGATTCTTCCCAGTCAAAGTTTG
CGAACAGGGCTGGCTTCTCTCATCCCCCAAAAGAACGAGCCAACAATGTTTCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAG

mRNA sequence

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Protein sequence

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MEEESSIIHTLFSPSSQLLTVTLDPRVFAKKSFIFSLNLCINAMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSL
RTGLASLIPQKNEPTMFLGWRMGLASILLKKHN

Cucsat.G19217 (gene) of Cucumber (B10) v3 genome