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Cucsat.G19441 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G19441
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRibosomal protein L18ae family
Genome locationctg4:182301..185118
RNA-Seq ExpressionCucsat.G19441
SyntenyCucsat.G19441
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]2.39e-88100Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL
        ARRDPRERAGLAASAIAALACSILLLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]2.79e-8797.74Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL
        ARRDPRERAGLAASAIAALACSI+LLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL

XP_011648592.1 uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]1.95e-122100Show/hide
Query:  MKSSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRD
        MKSSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRD
Subjt:  MKSSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRD

Query:  VEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL
        VEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL
Subjt:  VEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]5.95e-8089.31Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAV
        +RRDPRERAGLAAS+IAALACS++LL+VVAV
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAV

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]2.67e-8595.49Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL
        ARRDPRERAGLAASAIAALACSI+LL+VVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein5.57e-121100Show/hide
Query:  SSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVE
        SSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVE
Subjt:  SSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVE

Query:  DAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL
        DAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL
Subjt:  DAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL

A0A1S3CAZ9 uncharacterized protein LOC1034986581.35e-8797.74Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL
        ARRDPRERAGLAASAIAALACSI+LLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-11.35e-8797.74Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL
        ARRDPRERAGLAASAIAALACSI+LLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAVLL

A0A6J1G4J6 uncharacterized protein LOC1114506862.88e-8089.31Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAV
        +RRDPRERAGLAAS+IAALACS++LL+VVAV
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAV

A0A6J1KAT7 uncharacterized protein LOC1114937958.25e-8088.55Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRP+ARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSILLLIVVAV
        +RRDPRERAGLAAS+IAALACS++LL+VVAV
Subjt:  ARRDPRERAGLAASAIAALACSILLLIVVAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family6.4e-2262.92Show/hide
Query:  RSKYTLLR-DVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLLIVVAVLL
        + KY L+R D ED+++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  S+ L+I V VL+
Subjt:  RSKYTLLR-DVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLLIVVAVLL

AT1G54217.2 Ribosomal protein L18ae family2.2e-2260Show/hide
Query:  DAPDHIRSKYTLLR-DVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLLIVVAVLL
        D  +  + KY L+R D ED+++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  S+ L+I V VL+
Subjt:  DAPDHIRSKYTLLR-DVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLLIVVAVLL

AT4G26060.1 Ribosomal protein L18ae family5.9e-3661.79Show/hide
Query:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPR
        D + +LVKSV+DKH  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF FP LWYYAT+LYF N  R+DPR
Subjt:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPR

Query:  ERAGLAASAIAALACSILLLIVV
        ERAGLAASAI A+  S+LLL++V
Subjt:  ERAGLAASAIAALACSILLLIVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown1.2e-3354.48Show/hide
Query:  MDPNGKM---DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILY
        MD N K    +   +LVK ++D+H  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LY
Subjt:  MDPNGKM---DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILY

Query:  FWN-ARRDPRERAGLAASAIAALACSILLLIVVA
        F N  R+DPRERAGLAASAI A+  S++LL++ A
Subjt:  FWN-ARRDPRERAGLAASAIAALACSILLLIVVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)1.8e-2966.3Show/hide
Query:  KDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLLIVVA
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF N  R+DPRERAGLAASAI A+  S++LL++ A
Subjt:  KDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLLIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTTTACAAAGTGGATACTGCGAATTCTAAGAGTTCA
TTCTTCCATAAACACCGGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTG
CCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAAGTAGGGCTATATGAC
AAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCG
CAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCAATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTTTACAAAGTGGATACTGCGAATTCTAAGAGTTCA
TTCTTCCATAAACACCGGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTG
CCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAAGTAGGGCTATATGAC
AAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCG
CAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCAATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA
Protein sequenceShow/hide protein sequence
MKSSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYD
KPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL