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Cucsat.G19742 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G19742
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description40S ribosomal protein S30
Genome locationctg4:347482..348163
RNA-Seq ExpressionCucsat.G19742
SyntenyCucsat.G19742
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006846 - Ribosomal protein S30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI35991.3 unnamed protein product, partial [Vitis vinifera]1.34e-2472Show/hide
Query:  PNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        PNP+LC    +   + S    P   +  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
Subjt:  PNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

KAA0061505.1 Ribosomal protein S30 [Cucumis melo var. makuwa]1.12e-2587.5Show/hide
Query:  VSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        V R   R+ S  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
Subjt:  VSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

KAF5192970.1 40S ribosomal protein S30 [Thalictrum thalictroides]3.39e-2492.73Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAG-MCLFSQ
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAG +C F Q
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAG-MCLFSQ

KDO55923.1 hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis]3.46e-2481.82Show/hide
Query:  VSRKRSRQVSPP--LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        VS+++ +Q  P   L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
Subjt:  VSRKRSRQVSPP--LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

XP_004141043.2 40S ribosomal protein S30 [Cucumis sativus]1.14e-47100Show/hide
Query:  MLVLYPNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        MLVLYPNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
Subjt:  MLVLYPNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

TrEMBL top hitse value%identityAlignment
A0A067ELF8 40S ribosomal protein S30 (Fragment)1.68e-2481.82Show/hide
Query:  VSRKRSRQVSPP--LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        VS+++ +Q  P   L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
Subjt:  VSRKRSRQVSPP--LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

A0A0A0LFS8 40S ribosomal protein S305.54e-48100Show/hide
Query:  MLVLYPNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        MLVLYPNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
Subjt:  MLVLYPNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

A0A5A7V6N6 40S ribosomal protein S305.41e-2687.5Show/hide
Query:  VSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        V R   R+ S  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
Subjt:  VSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

A0A7J6W8R0 40S ribosomal protein S301.64e-2492.73Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAG-MCLFSQ
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAG +C F Q
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAG-MCLFSQ

A0A803RC99 Uncharacterized protein7.71e-2592.73Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGMCLFSQF
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGM  F  F
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGMCLFSQF

SwissProt top hitse value%identityAlignment
P49689 40S ribosomal protein S309.0e-1895.74Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTA
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

P62860 40S ribosomal protein S308.8e-1388.37Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV

P62861 40S ribosomal protein S308.8e-1388.37Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV

P62862 40S ribosomal protein S308.8e-1388.37Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV

P62866 40S ribosomal protein S308.8e-1388.37Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV

Arabidopsis top hitse value%identityAlignment
AT2G19750.1 Ribosomal protein S30 family protein6.4e-1995.74Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTA
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

AT4G29390.1 Ribosomal protein S30 family protein6.4e-1995.74Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTA
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA

AT5G56670.1 Ribosomal protein S30 family protein6.4e-1995.74Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTA
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTCCTATACCCTAACCCTAATCTTTGCCAATTTGCGTTCTTAGTTTCTAGGAAACGAAGCCGACAAGTCAGTCCACCGCTTATCAGATTCGCCATGGGTAAGGT
TCATGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAAACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACA
ACCGCAGATTCGTAACTGCCGGTATGTGTCTATTCTCGCAATTTTCTCTACCTCTCTTATTTTGTAATTATGTTTCTAGTTTTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTCCTATACCCTAACCCTAATCTTTGCCAATTTGCGTTCTTAGTTTCTAGGAAACGAAGCCGACAAGTCAGTCCACCGCTTATCAGATTCGCCATGGGTAAGGT
TCATGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAAACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACA
ACCGCAGATTCGTAACTGCCGGTATGTGTCTATTCTCGCAATTTTCTCTACCTCTCTTATTTTGTAATTATGTTTCTAGTTTTTTATGA
Protein sequenceShow/hide protein sequence
MLVLYPNPNLCQFAFLVSRKRSRQVSPPLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGMCLFSQFSLPLLFCNYVSSFL