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Cucsat.G2051 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G2051
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationctg1002:6028553..6030206
RNA-Seq ExpressionCucsat.G2051
SyntenyCucsat.G2051
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW61049.1 putative ribonuclease H protein [Vitis vinifera]1.22e-2236.04Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        L P  C LC ++ E++DHLFLHCP T   W+ LF +  +    P  I+  ++      G S +G ILW+ A  +L+W +W+ERN+RIF+D+  + +  W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWST
        +++  +S W++
Subjt:  VVQHTASWWST

RVW65318.1 hypothetical protein CK203_058130 [Vitis vinifera]4.47e-2439.09Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        LSP++C LC K  ET+DHLFLHC  T+  W+ LF +  ++   P  I        N  G S +G +LW+ A  +L+W +W+ERN+RIF+D+  +    W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWS
         ++  AS W+
Subjt:  VVQHTASWWS

RVW79087.1 putative ribonuclease H protein [Vitis vinifera]1.04e-2339.09Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        LSP++C LC K  ET+DHLFLHC  T+  W+ LF +  ++   P  I        N  G S +G +LW+ A  +L+W +W+ERN+RIF+D+  +    W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWS
         ++  AS W+
Subjt:  VVQHTASWWS

RVW92607.1 putative ribonuclease H protein [Vitis vinifera]1.04e-2339.09Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        LSP++C LC K  ET+DHLFLHC  T+  W+ LF +  ++   P  I        N  G S +G +LW+ A  +L+W +W+ERN+RIF+D+  +    W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWS
         ++  AS W+
Subjt:  VVQHTASWWS

RVW92839.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.35e-2340.37Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        +SP +C LC K  ET+DHLFLHCP T   WY LF +  ++   P  I   +    N  G S +G +LW+ A  +LLW +W+ERN+RIF+ +  + ++ W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWW
        ++   AS W
Subjt:  VVQHTASWW

TrEMBL top hitse value%identityAlignment
A0A438FM03 Putative ribonuclease H protein5.93e-2336.04Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        L P  C LC ++ E++DHLFLHCP T   W+ LF +  +    P  I+  ++      G S +G ILW+ A  +L+W +W+ERN+RIF+D+  + +  W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWST
        +++  +S W++
Subjt:  VVQHTASWWST

A0A438FZH6 zf-RVT domain-containing protein2.17e-2439.09Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        LSP++C LC K  ET+DHLFLHC  T+  W+ LF +  ++   P  I        N  G S +G +LW+ A  +L+W +W+ERN+RIF+D+  +    W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWS
         ++  AS W+
Subjt:  VVQHTASWWS

A0A438H449 Putative ribonuclease H protein5.01e-2439.09Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        LSP++C LC K  ET+DHLFLHC  T+  W+ LF +  ++   P  I        N  G S +G +LW+ A  +L+W +W+ERN+RIF+D+  +    W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWS
         ++  AS W+
Subjt:  VVQHTASWWS

A0A438I7G2 Putative ribonuclease H protein5.01e-2439.09Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        LSP++C LC K  ET+DHLFLHC  T+  W+ LF +  ++   P  I        N  G S +G +LW+ A  +L+W +W+ERN+RIF+D+  +    W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWWS
         ++  AS W+
Subjt:  VVQHTASWWS

A0A438I862 LINE-1 retrotransposable element ORF2 protein6.52e-2440.37Show/hide
Query:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        +SP +C LC K  ET+DHLFLHCP T   WY LF +  ++   P  I   +    N  G S +G +LW+ A  +LLW +W+ERN+RIF+ +  + ++ W 
Subjt:  LSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHTASWW
        ++   AS W
Subjt:  VVQHTASWW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G45063.1 copper ion binding;electron carriers2.3e-0529.41Show/hide
Query:  PSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRI
        PS+C LC   +ET  H+F  CPF+ + W   F   +  +  P ++ +     L       K   + K A ++ ++ IW+ERN R+
Subjt:  PSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRI

AT2G06845.1 Beta-galactosidase related protein1.1e-0427.59Show/hide
Query:  CCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRF
        CC C  + ET+ H+  HC F +  W                +   +I G       P G      A   + WS+WK RN ++F  RF
Subjt:  CCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRF

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.1e-0630.48Show/hide
Query:  PSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIF--DLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT
        PS   LC+  +ET  HLF  C F+   W      F       LP+    W+++ L  R +S     + K   +S ++ +WKERN+RIF    +S  S   
Subjt:  PSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIF--DLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRFNSFDSFWT

Query:  VVQHT
         +  T
Subjt:  VVQHT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCAACAGAAACCCAAAAGTTTATTTGTTTCTAGAAAAAATTCGGAACACTTTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACGTTGGATCATTT
ATTTCTACATTGTCCCTTCACAAGAAAAGCTTGGTACACTCTGTTTGGTATTTTCGATTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGATGGATGATTGAAGGTCTTA
ACTTTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGCGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATCTTTGACGATAGATTT
AATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACACAGCCTCTTGGTGGAGTACGAAT
mRNA sequenceShow/hide mRNA sequence
TGCAACAGAAACCCAAAAGTTTATTTGTTTCTAGAAAAAATTCGGAACACTTTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACGTTGGATCATTT
ATTTCTACATTGTCCCTTCACAAGAAAAGCTTGGTACACTCTGTTTGGTATTTTCGATTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGATGGATGATTGAAGGTCTTA
ACTTTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGCGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATCTTTGACGATAGATTT
AATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACACAGCCTCTTGGTGGAGTACGAAT
Protein sequenceShow/hide protein sequence
CNRNPKVYLFLEKIRNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWYTLFGIFDLELCLPSKIDRWMIEGLNFRGYSPKGNILWKCATRSLLWSIWKERNSRIFDDRF
NSFDSFWTVVQHTASWWSTN