; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G20652 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G20652
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationctg62:756233..759918
RNA-Seq ExpressionCucsat.G20652
SyntenyCucsat.G20652
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TKY50015.1 Small nuclear ribonucleoprotein E [Spatholobus suberectus]1.21e-4874.02Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQR+MTQPIV     FF  +S+ L  F    +L  F F         QNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        +KKKSRK+LGRILLKGDNITLMMN+GK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

XP_004139778.1 small nuclear ribonucleoprotein E [Cucumis sativus]1.69e-4569.29Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

XP_022156313.1 small nuclear ribonucleoprotein E-like [Momordica charantia]4.84e-4568.5Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRKTLGRILLKGDNITLMMN+GK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

XP_039006230.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus]2.40e-4568.5Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        +KKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

XP_042990587.1 small nuclear ribonucleoprotein E-like isoform X1 [Carya illinoinensis]3.84e-4568.5Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPIV                                     QNLIFRFLQSKARIQIWLFEQ+DLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRK+LGRILLKGDNITLMMN+GK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

TrEMBL top hitse value%identityAlignment
A0A0A0K3R1 Small nuclear ribonucleoprotein E8.17e-4669.29Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

A0A1S3BIS5 Small nuclear ribonucleoprotein E8.17e-4669.29Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

A0A1U8JTM2 Small nuclear ribonucleoprotein E3.33e-4568.5Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRK+LGRILLKGDNITLMMNSGK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

A0A5D2FR92 Small nuclear ribonucleoprotein E3.33e-4568.5Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRK+LGRILLKGDNITLMMNSGK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

A0A6J1DT21 Small nuclear ribonucleoprotein E2.34e-4568.5Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        VKKKSRKTLGRILLKGDNITLMMN+GK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E1.1e-2373.24Show/hide
Query:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E1.1e-2373.24Show/hide
Query:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E1.1e-2373.24Show/hide
Query:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E1.1e-2373.24Show/hide
Query:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E1.1e-2373.24Show/hide
Query:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein6.7e-3462.99Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        +KK +RK LGRILLKGDNITLMMN+GK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.3e-2458.18Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLG
        +KK +RK LG
Subjt:  VKKKSRKTLG

AT4G20440.1 small nuclear ribonucleoprotein associated protein B8.6e-0530.49Show/hide
Query:  IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNVKKKSRKTLGRILLKGDNITLMMNSG
        + +F+  + R+ I    Q   ++ G+ + FD +MNLVL D EE           +N +++ R+TLG +LL+G+ +  M   G
Subjt:  IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNVKKKSRKTLGRILLKGDNITLMMNSG

AT4G30330.1 Small nuclear ribonucleoprotein family protein1.8e-3463.78Show/hide
Query:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN
        MASTKVQRIMTQPI                                       NLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+
Subjt:  MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN

Query:  VKKKSRKTLGRILLKGDNITLMMNSGK
        +KKK+RK LGRILLKGDNITLMMN+GK
Subjt:  VKKKSRKTLGRILLKGDNITLMMNSGK

AT5G48870.1 Small nuclear ribonucleoprotein family protein3.9e-0536.49Show/hide
Query:  LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--LGRILLKGDNITLMMNSG
        LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + R+   L +ILL G+NI +++  G
Subjt:  LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--LGRILLKGDNITLMMNSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAGTACTTTCTCATCTCAACTTCTTTTGCTTCATTTCAGCCTTGCTTTTCGTTTTTTTCTTACGTGTTTC
TCTGATACATTTCTCTTTCTCTCTTTTATTGGATGTTGGTGCACTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAA
AAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGG
AGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGGGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAGTACTTTCTCATCTCAACTTCTTTTGCTTCATTTCAGCCTTGCTTTTCGTTTTTTTCTTACGTGTTTC
TCTGATACATTTCTCTTTCTCTCTTTTATTGGATGTTGGTGCACTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAA
AAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGG
AGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGGGCAAGTGA
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPIVLSHLNFFCFISALLFVFFLRVSLIHFSFSLLLDVGALQNLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLG
RILLKGDNITLMMNSGK