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Cucsat.G20683 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G20683
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionla-related protein 6B-like
Genome locationctg62:66291..70353
RNA-Seq ExpressionCucsat.G20683
SyntenyCucsat.G20683
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447184.1 PREDICTED: la-related protein 6B isoform X1 [Cucumis melo]3.73e-6396.3Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGF+MGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNMT
        KPVTVNMT
Subjt:  KPVTVNMT

XP_008447188.1 PREDICTED: la-related protein 6B isoform X4 [Cucumis melo]2.99e-6596.3Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGF+MGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNMT
        KPVTVNMT
Subjt:  KPVTVNMT

XP_031744247.1 la-related protein 6B isoform X1 [Cucumis sativus]1.33e-65100Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNMT
        KPVTVNMT
Subjt:  KPVTVNMT

XP_031744248.1 la-related protein 6B isoform X2 [Cucumis sativus]7.74e-66100Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNMT
        KPVTVNMT
Subjt:  KPVTVNMT

XP_038888029.1 la-related protein 6B [Benincasa hispida]5.40e-6094.39Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHP EQREE GNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNH+HGNH+GTPP SSSTTIEQAGTMKQQPPGPRMPDGTRGF+MGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNM
        KPVTVNM
Subjt:  KPVTVNM

TrEMBL top hitse value%identityAlignment
A0A0A0K3E0 Uncharacterized protein7.70e-71100Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNMT
        KPVTVNMT
Subjt:  KPVTVNMT

A0A1S3BGA3 la-related protein 6B isoform X41.45e-6596.3Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGF+MGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNMT
        KPVTVNMT
Subjt:  KPVTVNMT

A0A1S3BGU3 la-related protein 6B isoform X11.80e-6396.3Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN H+HGNH+GTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGF+MGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNMT
        KPVTVNMT
Subjt:  KPVTVNMT

A0A6J1EJ80 la-related protein 6B-like1.56e-5489.72Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQ DVHP EQREE GNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNH  GNH+GTPP SSS++IEQAGT+KQQPPGPRMPDGTRGFSMGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNM
        KPV+VNM
Subjt:  KPVTVNM

A0A6J1I059 la-related protein 6B-like1.56e-5489.72Show/hide
Query:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG
        EKHVDDLSDQ DVHP EQREE GNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNH  GNH+GTPP SSS++IEQAGT+KQQPPGPRMPDGTRGFSMGRG
Subjt:  EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRG

Query:  KPVTVNM
        KPV+VNM
Subjt:  KPVTVNM

SwissProt top hitse value%identityAlignment
O80567 La-related protein 6B1.3e-1954.76Show/hide
Query:  EKHVDDLSDQVDVHPPEQ--REEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNHSH---GNH-------LGTPPPSS-STTIEQAGTM
        EK  DD S + D H  EQ   E+ GNEK   GQR+ RNR RGKGRGR Q H        H+HN NH+H   GNH       +GT P ++    +EQ G  
Subjt:  EKHVDDLSDQVDVHPPEQ--REEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNHSH---GNH-------LGTPPPSS-STTIEQAGTM

Query:  KQQPPGPRMPDGTRGFSMGRGKPVTV
        KQQPPGPRMPDGTRGFSMGRGKPV V
Subjt:  KQQPPGPRMPDGTRGFSMGRGKPVTV

Q94A38 La-related protein 6A1.6e-0437.04Show/hide
Query:  DQVDVHPPEQREEHGNEK----------DGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIE-QAGTMKQQPPGPRMPDGTRGF
        DQ      ++  EH N +          DGG  ++ +N  +G+  G+GR Q       NH  GN +G    SSS+        + ++PPGPRMPDGTRGF
Subjt:  DQVDVHPPEQREEHGNEK----------DGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIE-QAGTMKQQPPGPRMPDGTRGF

Query:  SMGRGKPV
        +MGRGK +
Subjt:  SMGRGKPV

Arabidopsis top hitse value%identityAlignment
AT2G43970.1 RNA-binding protein9.5e-2154.76Show/hide
Query:  EKHVDDLSDQVDVHPPEQ--REEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNHSH---GNH-------LGTPPPSS-STTIEQAGTM
        EK  DD S + D H  EQ   E+ GNEK   GQR+ RNR RGKGRGR Q H        H+HN NH+H   GNH       +GT P ++    +EQ G  
Subjt:  EKHVDDLSDQVDVHPPEQ--REEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNHSH---GNH-------LGTPPPSS-STTIEQAGTM

Query:  KQQPPGPRMPDGTRGFSMGRGKPVTV
        KQQPPGPRMPDGTRGFSMGRGKPV V
Subjt:  KQQPPGPRMPDGTRGFSMGRGKPVTV

AT2G43970.2 RNA-binding protein9.5e-2154.76Show/hide
Query:  EKHVDDLSDQVDVHPPEQ--REEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNHSH---GNH-------LGTPPPSS-STTIEQAGTM
        EK  DD S + D H  EQ   E+ GNEK   GQR+ RNR RGKGRGR Q H        H+HN NH+H   GNH       +GT P ++    +EQ G  
Subjt:  EKHVDDLSDQVDVHPPEQ--REEHGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNNNHSH---GNH-------LGTPPPSS-STTIEQAGTM

Query:  KQQPPGPRMPDGTRGFSMGRGKPVTV
        KQQPPGPRMPDGTRGFSMGRGKPV V
Subjt:  KQQPPGPRMPDGTRGFSMGRGKPVTV

AT5G46250.1 RNA-binding protein1.1e-0537.04Show/hide
Query:  DQVDVHPPEQREEHGNEK----------DGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIE-QAGTMKQQPPGPRMPDGTRGF
        DQ      ++  EH N +          DGG  ++ +N  +G+  G+GR Q       NH  GN +G    SSS+        + ++PPGPRMPDGTRGF
Subjt:  DQVDVHPPEQREEHGNEK----------DGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIE-QAGTMKQQPPGPRMPDGTRGF

Query:  SMGRGKPV
        +MGRGK +
Subjt:  SMGRGKPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGAAGCATGTAGATGATCTTTCTGATCAAGTCGATGTTCATCCACCTGAACAACGAGAGGAGCACGGAAATGAGAAGGATGGTGGTGGGCAGAGAAGAGTTCGAAATAG
GGTACGCGGTAAAGGGCGTGGTCGATCACAATATCATCATAATCACAATAATAACCATAGCCATGGGAACCATTTGGGAACTCCACCTCCAAGTAGTTCAACCACCATCG
AGCAGGCAGGTACAATGAAACAGCAACCTCCAGGGCCGCGAATGCCAGATGGGACAAGAGGCTTTTCGATGGGGCGGGGGAAGCCGGTGACTGTGAATATGACATGA
mRNA sequenceShow/hide mRNA sequence
GAGAAGCATGTAGATGATCTTTCTGATCAAGTCGATGTTCATCCACCTGAACAACGAGAGGAGCACGGAAATGAGAAGGATGGTGGTGGGCAGAGAAGAGTTCGAAATAG
GGTACGCGGTAAAGGGCGTGGTCGATCACAATATCATCATAATCACAATAATAACCATAGCCATGGGAACCATTTGGGAACTCCACCTCCAAGTAGTTCAACCACCATCG
AGCAGGCAGGTACAATGAAACAGCAACCTCCAGGGCCGCGAATGCCAGATGGGACAAGAGGCTTTTCGATGGGGCGGGGGAAGCCGGTGACTGTGAATATGACATGA
Protein sequenceShow/hide protein sequence
EKHVDDLSDQVDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDGTRGFSMGRGKPVTVNMT