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Cucsat.G20695 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G20695
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrotransposon protein
Genome locationctg62:310692..311840
RNA-Seq ExpressionCucsat.G20695
SyntenyCucsat.G20695
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037852.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.93e-2068.75Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +NV   +  RYRTR R++ TNVL  CD K DFV+VLAGWEGSA DSRILR+AISRPNGL+V KG
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

KAA0054344.1 retrotransposon protein [Cucumis melo var. makuwa]7.08e-2067.19Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +NV   +  RYRTRK ++ TNVL  CD K DF++VLAGWEGSAADSRILR+A+SRPNGL+V KG
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

KAA0063430.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.74e-2055.43Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKGSVTYDFGMLTVTESHKPGDDKCRCFGRC
        +NV   +HPRYRTRK K+  NVL  C+ K DFVFVL+GWEGS ADSRILR+ ISR NGL+V KG  T   G     +S+ P D +CR    C
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKGSVTYDFGMLTVTESHKPGDDKCRCFGRC

TYK22656.1 retrotransposon protein [Cucumis melo var. makuwa]6.97e-2070.31Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +NV   + P +RTRK KI TNVL  CD K DFV+VLAGWEGSAADSRILR+A+SR NGLQV KG
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

XP_008446951.1 PREDICTED: uncharacterized protein LOC103489505 [Cucumis melo]4.81e-2074.14Show/hide
Query:  NHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +  RYRT KR++ TNVL  CD K DFV+VL GWEGSAADSRILR+AISRPNGL+VLKG
Subjt:  NHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

TrEMBL top hitse value%identityAlignment
A0A1S3BGY1 uncharacterized protein LOC1034895052.33e-2074.14Show/hide
Query:  NHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +  RYRT KR++ TNVL  CD K DFV+VL GWEGSAADSRILR+AISRPNGL+VLKG
Subjt:  NHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

A0A5A7T305 Putative nuclease HARBI19.33e-2168.75Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +NV   +  RYRTR R++ TNVL  CD K DFV+VLAGWEGSA DSRILR+AISRPNGL+V KG
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

A0A5A7UGR5 Retrotransposon protein3.43e-2067.19Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +NV   +  RYRTRK ++ TNVL  CD K DF++VLAGWEGSAADSRILR+A+SRPNGL+V KG
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

A0A5A7V8C5 Putative nuclease HARBI18.43e-2155.43Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKGSVTYDFGMLTVTESHKPGDDKCRCFGRC
        +NV   +HPRYRTRK K+  NVL  C+ K DFVFVL+GWEGS ADSRILR+ ISR NGL+V KG  T   G     +S+ P D +CR    C
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKGSVTYDFGMLTVTESHKPGDDKCRCFGRC

A0A5D3DGC8 Retrotransposon protein3.37e-2070.31Show/hide
Query:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +NV   + P +RTRK KI TNVL  CD K DFV+VLAGWEGSAADSRILR+A+SR NGLQV KG
Subjt:  MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28950.1 unknown protein8.9e-0846.81Show/hide
Query:  PRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISR
        P +R RK  I  N+L  C+   +F++VL+GWEGSA DS++L +A++R
Subjt:  PRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISR

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.4e-0542.59Show/hide
Query:  YRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG
        +R     +  NVL        F +VLAGWEGSA+D ++L  A++R N LQV +G
Subjt:  YRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTGTATGTGTTAAATCATCCTAGGTATAGAACACGTAAGAGAAAAATTTTCACAAACGTCCTTGACTTCTGTGACATGAAATGTGACTTCGTATTCGTCTTGGC
TGGTTGGGAAGGATCCGCAGCTGATTCCCGTATACTTCGCAATGCTATTTCACGACCCAATGGACTGCAGGTTCTGAAGGGTTCAGTGACATACGATTTTGGCATGTTGA
CTGTAACAGAATCTCATAAACCGGGAGATGACAAATGTCGATGTTTTGGACGATGTGGACAAGGGAGACTCAGTGTATGCGATGATAGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTGTATGTGTTAAATCATCCTAGGTATAGAACACGTAAGAGAAAAATTTTCACAAACGTCCTTGACTTCTGTGACATGAAATGTGACTTCGTATTCGTCTTGGC
TGGTTGGGAAGGATCCGCAGCTGATTCCCGTATACTTCGCAATGCTATTTCACGACCCAATGGACTGCAGGTTCTGAAGGGTTCAGTGACATACGATTTTGGCATGTTGA
CTGTAACAGAATCTCATAAACCGGGAGATGACAAATGTCGATGTTTTGGACGATGTGGACAAGGGAGACTCAGTGTATGCGATGATAGGAGTTGA
Protein sequenceShow/hide protein sequence
MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKGSVTYDFGMLTVTESHKPGDDKCRCFGRCGQGRLSVCDDRS