; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G20702 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G20702
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description60S ribosomal protein L27
Genome locationctg62:620575..621362
RNA-Seq ExpressionCucsat.G20702
SyntenyCucsat.G20702
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608000.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia]5.32e-8293.33Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGR+AGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVN DCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

XP_004145994.3 60S ribosomal protein L27-3 [Cucumis sativus]2.93e-8594.07Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKKKT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

XP_008464678.1 PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo]1.45e-8595.56Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

XP_011658974.2 60S ribosomal protein L27 [Cucumis sativus]2.23e-89100Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

XP_022940098.1 60S ribosomal protein L27-3-like [Cucurbita moschata]9.82e-8494.07Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGR+AGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

TrEMBL top hitse value%identityAlignment
A0A0A0K3A4 60S ribosomal protein L274.40e-8998.52Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKKKT+KKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

A0A0A0L310 60S ribosomal protein L271.21e-8694.81Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKKKT+KKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

A0A1S3CNL3 60S ribosomal protein L277.03e-8695.56Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

A0A5A7SSA5 60S ribosomal protein L277.03e-8695.56Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

A0A6J1FNC2 60S ribosomal protein L274.75e-8494.07Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGR+AGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+VSKV+ASKEIKKRLE+RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L272.8e-5176.98Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDL----KDVVN
        M KF+KPNKAVI+LQG+YAGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KVIRKDS KK  KKSRVKAFIKL NY HIMPTRYTLD DL    KDVVN
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDL----KDVVN

Query:  VDCLQSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
         D LQ+R  KV+A +  K RL  RFKTGKNRWFFTKLRF
Subjt:  VDCLQSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

P51419 60S ribosomal protein L27-31.4e-5578.52Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGRYAG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS KKT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+  KV+A KE K +LE RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

Q05462 60S ribosomal protein L271.1e-5579.26Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+KPNKAVI+LQGRYAG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKVI+KDS KKT KKSRVKAF+KL NYQH+MPTRYTLDVDLKD V  D L
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+  KV+A KE KK LE RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

Q8LCL3 60S ribosomal protein L27-26.1e-5477.04Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGRYAG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS KKT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        +S+  KV+A KE K +LE RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

Q9SKX8 60S ribosomal protein L27-13.1e-5071.85Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVK +KP KAVI+LQGRY G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS KKT KKSRVK F K+ NYQH+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
         S+  KV+A KE K + E RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family2.2e-5171.85Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVK +KP KAVI+LQGRY G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS KKT KKSRVK F K+ NYQH+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
         S+  KV+A KE K + E RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

AT3G22230.1 Ribosomal L27e protein family4.3e-5577.04Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGRYAG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS KKT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        +S+  KV+A KE K +LE RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

AT4G15000.1 Ribosomal L27e protein family1.0e-5678.52Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGRYAG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS KKT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
        QS+  KV+A KE K +LE RFKTGKNRWFFTKLRF
Subjt:  QSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF

AT4G15000.2 Ribosomal L27e protein family6.0e-4976.42Show/hide
Query:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGRYAG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS KKT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSRVSKVSASKEIKKRLENRFKT
        QS+  KV+A KE K +LE RFKT
Subjt:  QSRVSKVSASKEIKKRLENRFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCC
CTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGC
TTGAGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCA
AAGGAGATCAAAAAGAGATTGGAGAACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCC
CTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGC
TTGAGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCA
AAGGAGATCAAAAAGAGATTGGAGAACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA
Protein sequenceShow/hide protein sequence
MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSAS
KEIKKRLENRFKTGKNRWFFTKLRF