; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G2096 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G2096
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionprotein LSD1
Genome locationctg1002:6942452..6948923
RNA-Seq ExpressionCucsat.G2096
SyntenyCucsat.G2096
Gene Ontology termsGO:0007034 - vacuolar transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005768 - endosome (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR036280 - Multiheme cytochrome superfamily
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439499.1 PREDICTED: protein LSD1 [Cucumis melo]3.29e-122100Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_011658526.1 vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus]1.04e-118100Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_022146603.1 protein LSD1 [Momordica charantia]1.83e-11997.66Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRS+LLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_023544395.1 protein LSD1-like [Cucurbita pepo subsp. pepo]4.49e-12097.66Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICHYVTNVG+SNVRVPIPVHRRNGT+ SGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_038882803.1 protein LSD1 [Benincasa hispida]2.51e-11999.42Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPP GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

TrEMBL top hitse value%identityAlignment
A0A0A0KJ18 Uncharacterized protein1.59e-122100Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A1S3AZJ7 protein LSD11.59e-122100Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A5A7U9M7 Vacuolar protein sorting-associated protein 2-like protein 23.71e-117100Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
        KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK

A0A6J1CZ01 protein LSD18.86e-12097.66Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRS+LLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A6J1ECU7 vacuolar protein sorting-associated protein 2 homolog 2-like1.36e-11798.25Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICHYVTNVG+SNVRVPIPVHRRNGT+SSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

SwissProt top hitse value%identityAlignment
P94077 Protein LSD19.1e-6367.38Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL PA +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+C +VTNV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

Q0J7V9 Protein LSD11.4e-4775.22Show/hide
Query:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVK
        QSQLVCSGCR++L+YP GAT+VCCA+C+TVT+VP PGT+MAQL+CGGC TLLMY RGATSV+CSCCHTVNLA   NQVAHVNCGNCR  L++ YGA SVK
Subjt:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVK

Query:  CAICHYVTNVGIS
        CA+C++VT+VG S
Subjt:  CAICHYVTNVGIS

Q2QMB3 Protein LOL22.4e-5563.31Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTS-VPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPS
        MQSQ+VC GCR+ILLYP GA +VCCA+C+ V+S  P PG D+A LICGGCRTLLMY R ATSVRCSCC TVNL    + +AH+NCG C+T L++PYGAPS
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTS-VPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPS

Query:  VKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTT
        VKCAIC+++TN G++ +R  +P +  + T  S   P++ SQ+ TVVVENPM+VD  GKLVSNVVVGVTT
Subjt:  VKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTT

Q6ASS2 Protein LOL33.3e-5762.03Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG--TDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAP
        MQSQ+VC GCRS+L YP GA +VCCALC  +T+VPPP    +MA LICGGCRTLLMY R A +VRCSCC TVNL    N +AHV+CG CRTTL++PYGAP
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG--TDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAP

Query:  SVKCAICHYVTNVGISNVR-VPIPVHRRNGTISSGMPPSSSS--------------QSQTVVVENPMSVDESGKLVSNVVVGVTTDK
        SVKCAICHY+TN G++ V   P P+   +G+ S   PPS SS              Q+ TVVVENPM+VDE GKLVSNVVVGVTT K
Subjt:  SVKCAICHYVTNVGISNVR-VPIPVHRRNGTISSGMPPSSSS--------------QSQTVVVENPMSVDESGKLVSNVVVGVTTDK

Q93ZB1 Protein LOL15.3e-4775.68Show/hide
Query:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVK
        QSQLVCSGCR++L+YP GAT+VCCA+CN VT+VPPPGT+MAQL+CGGC TLLMY RGATSV+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVK
Subjt:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVK

Query:  CAICHYVTNVG
        CA+C++VT+VG
Subjt:  CAICHYVTNVG

Arabidopsis top hitse value%identityAlignment
AT4G20380.1 LSD1 zinc finger family protein6.4e-6467.38Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL PA +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+C +VTNV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.2 LSD1 zinc finger family protein6.4e-6467.38Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL PA +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+C +VTNV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.3 LSD1 zinc finger family protein6.4e-6467.38Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL PA +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+C +VTNV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.4 LSD1 zinc finger family protein6.4e-6467.38Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL PA +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+C +VTNV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.5 LSD1 zinc finger family protein6.4e-6467.38Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL PA +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+C +VTNV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCAGGGGGGGCAACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCC
TGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACGTTGCTTATGTACGCACGTGGGGCAACAAGTGTAAGATGCTCATGTTGCCATACAGTGAACCTTGCAC
CTGCTACGAACCAGGTTGCTCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCTTATGGAGCTCCATCTGTCAAATGTGCGATCTGTCACTATGTTACAAAT
GTTGGTATATCCAACGTGAGGGTTCCCATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCCCCTTCATCATCATCTCAGAGCCAAACAGTTGTAGTTGA
GAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTCGTTGTTGGTGTCACAACAGATAAAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCAGGGGGGGCAACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCC
TGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACGTTGCTTATGTACGCACGTGGGGCAACAAGTGTAAGATGCTCATGTTGCCATACAGTGAACCTTGCAC
CTGCTACGAACCAGGTTGCTCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCTTATGGAGCTCCATCTGTCAAATGTGCGATCTGTCACTATGTTACAAAT
GTTGGTATATCCAACGTGAGGGTTCCCATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCCCCTTCATCATCATCTCAGAGCCAAACAGTTGTAGTTGA
GAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTCGTTGTTGGTGTCACAACAGATAAAAGGTAA
Protein sequenceShow/hide protein sequence
MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTN
VGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR