CuGenDBv2

Gene ID	Cucsat.G21208
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	chloride conductance regulatory protein ICln
Genome location	ctg910:3523369..3527920
RNA-Seq Expression	Cucsat.G21208
Synteny	Cucsat.G21208
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0006821 - chloride transport (biological process) GO:0006884 - cell volume homeostasis (biological process) GO:0045292 - mRNA cis splicing, via spliceosome (biological process) GO:0005681 - spliceosomal complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0034709 - methylosome (cellular component) GO:0034715 - pICln-Sm protein complex (cellular component)
InterPro domains	IPR011993 - PH-like domain superfamily IPR039924 - ICln/Lot5

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055130.1 chloride conductance regulatory protein ICln isoform X1 [Cucumis melo var. makuwa]

2.27e-74

95.73

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDL AVREMRLVPSNPNELETLFEIFCQCAELNPEP GDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQIND+
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENN-GKH
        RFEDA+EMEPENN GKH
Subjt:  RFEDADEMEPENN-GKH

XP_004143651.1 chloride conductance regulatory protein ICln isoform X1 [Cucumis sativus]

2.57e-80

100

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENNGKHC
        RFEDADEMEPENNGKHC
Subjt:  RFEDADEMEPENNGKHC

XP_008467268.1 PREDICTED: chloride conductance regulatory protein ICln isoform X1 [Cucumis melo]

2.63e-73

94.87

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDL AVREMRLVPSNPNELETLFEIFCQCAELNPEP GDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIG+SNGDHDQLARTVLQLQIND+
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENN-GKH
        RFEDA+EMEPENN GKH
Subjt:  RFEDADEMEPENN-GKH

XP_008467269.1 PREDICTED: chloride conductance regulatory protein ICln isoform X2 [Cucumis melo]

6.10e-69

92.31

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDL AVREMRLVPSNPNELETLFEIFCQCAELNPEP GDEEEEEHNWFFGADQLEQMP   VAGDDEEQFSSIPPSSIG+SNGDHDQLARTVLQLQIND+
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENN-GKH
        RFEDA+EMEPENN GKH
Subjt:  RFEDADEMEPENN-GKH

XP_011654882.1 chloride conductance regulatory protein ICln isoform X2 [Cucumis sativus]

6.01e-76

97.44

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMP   VAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENNGKHC
        RFEDADEMEPENNGKHC
Subjt:  RFEDADEMEPENNGKHC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPP2 Uncharacterized protein

1.25e-80

100

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENNGKHC
        RFEDADEMEPENNGKHC
Subjt:  RFEDADEMEPENNGKHC

A0A1S3CTC6 chloride conductance regulatory protein ICln isoform X1

1.27e-73

94.87

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDL AVREMRLVPSNPNELETLFEIFCQCAELNPEP GDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIG+SNGDHDQLARTVLQLQIND+
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENN-GKH
        RFEDA+EMEPENN GKH
Subjt:  RFEDADEMEPENN-GKH

A0A1S3CUF8 chloride conductance regulatory protein ICln isoform X2

2.95e-69

92.31

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDL AVREMRLVPSNPNELETLFEIFCQCAELNPEP GDEEEEEHNWFFGADQLEQMP   VAGDDEEQFSSIPPSSIG+SNGDHDQLARTVLQLQIND+
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENN-GKH
        RFEDA+EMEPENN GKH
Subjt:  RFEDADEMEPENN-GKH

A0A5D3DBS0 Chloride conductance regulatory protein ICln isoform X1

1.10e-74

95.73

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Query:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR
        FDL AVREMRLVPSNPNELETLFEIFCQCAELNPEP GDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQIND+
Subjt:  FDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDR

Query:  RFEDADEMEPENN-GKH
        RFEDA+EMEPENN GKH
Subjt:  RFEDADEMEPENN-GKH

A0A6J1K1I5 chloride conductance regulatory protein ICln

3.34e-64

83.48

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Query:  DLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDRR
        DL AVREMRLVPSNP ELE LF++ CQCAELNP+PTGDEEEEEHNWFF ADQLE+MPGLS  GDD+EQFSS P +SIGHSNGDHDQL+RTVLQLQIND+R
Subjt:  DLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDRR

Query:  FEDADEMEPENNGKH
        FEDA+EMEPE+NGKH
Subjt:  FEDADEMEPENNGKH

SwissProt top hits

e value

%identity

Alignment

Q9LVA7 Chloride conductance regulatory protein ICln

2.4e-28

55.37

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Query:  KSLRIFDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEE-HNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQ
        +S  + DL+ +REMRLVPS+  +LETLF++FC+CAELNPEP  +EEEE  HNW F ADQ++   G     D E Q S  P S IGHSNGD + L + +L+
Subjt:  KSLRIFDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEE-HNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQ

Query:  LQINDRRFEDADEMEPENNGK
        LQIND+RFEDA+EM  E+  K
Subjt:  LQINDRRFEDADEMEPENNGK

Arabidopsis top hits

e value

%identity

Alignment

AT5G62290.1 nucleotide-sensitive chloride conductance regulator (ICln) family protein

1.7e-29

55.37

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Query:  KSLRIFDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEE-HNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQ
        +S  + DL+ +REMRLVPS+  +LETLF++FC+CAELNPEP  +EEEE  HNW F ADQ++   G     D E Q S  P S IGHSNGD + L + +L+
Subjt:  KSLRIFDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEE-HNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQ

Query:  LQINDRRFEDADEMEPENNGK
        LQIND+RFEDA+EM  E+  K
Subjt:  LQINDRRFEDADEMEPENNGK

AT5G62290.2 nucleotide-sensitive chloride conductance regulator (ICln) family protein

4.4e-30

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Query:  KSLRIFDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQL
        +S  + DL+ +REMRLVPS+  +LETLF++FC+CAELNPEP  +EEE  HNW F ADQ++   G     D E Q S  P S IGHSNGD + L + +L+L
Subjt:  KSLRIFDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQL

Query:  QINDRRFEDADEMEPENNGK
        QIND+RFEDA+EM  E+  K
Subjt:  QINDRRFEDADEMEPENNGK

Sequences

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CDS sequence

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ATGGTGAAGAGTCTGAGAATTTTTGACTTAGCTGCAGTTAGAGAGATGAGGCTTGTACCTTCGAATCCTAACGAATTAGAAACTCTGTTCGAGATATTCTGTCAGTGTGC
TGAGCTTAATCCTGAACCAACTGGAGATGAAGAAGAAGAAGAGCACAACTGGTTTTTTGGTGCCGATCAGTTGGAACAGATGCCAGGACTTTCAGTAGCAGGAGATGACG
AAGAACAATTCTCCTCTATTCCACCAAGTTCGATCGGCCACTCAAATGGAGATCATGATCAACTAGCTCGCACAGTGCTTCAGCTTCAAATCAATGATCGACGTTTTGAG
GACGCAGATGAGATGGAACCTGAAAACAATGGTAAGCATTGTTAG

mRNA sequence

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Protein sequence

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MVKSLRIFDLAAVREMRLVPSNPNELETLFEIFCQCAELNPEPTGDEEEEEHNWFFGADQLEQMPGLSVAGDDEEQFSSIPPSSIGHSNGDHDQLARTVLQLQINDRRFE
DADEMEPENNGKHC

Cucsat.G21208 (gene) of Cucumber (B10) v3 genome