CuGenDBv2

Gene ID	Cucsat.G21260
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Pentatricopeptide repeat-containing protein mitochondrial
Genome location	ctg910:117940..120146
RNA-Seq Expression	Cucsat.G21260
Synteny	Cucsat.G21260
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7016815.1 hypothetical protein SDJN02_21926, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.34e-55

87.38

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Query:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVAN
        RSKAGK +     S I MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYCTSTSSS+IRSFEPLPPPVNDVAN
Subjt:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVAN

Query:  LPV
        LPV
Subjt:  LPV

XP_008437637.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo]

4.11e-61

97.12

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Query:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVA
        RSKAGKKKKKKK S IPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV IRSFEPLPPPVNDVA
Subjt:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVA

Query:  NLPV
        NLPV
Subjt:  NLPV

XP_011654597.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus]

1.11e-66

100

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Query:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVAN
        RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVAN
Subjt:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVAN

Query:  LPV
        LPV
Subjt:  LPV

XP_031742148.1 uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus]

6.23e-66

100

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Query:  SKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANL
        SKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANL
Subjt:  SKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANL

Query:  PV
        PV
Subjt:  PV

XP_038875439.1 uncharacterized protein LOC120067894 [Benincasa hispida]

1.39e-56

91.35

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Query:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVA
        RSKAGKKKK    S I MENQSTCLSYEKLNG+A+WVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV IRSFEPLPPPVNDVA
Subjt:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVA

Query:  NLPV
        NLPV
Subjt:  NLPV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLU3 Uncharacterized protein

1.21e-55

100

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Query:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV
        MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV
Subjt:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV

A0A1S3AU63 uncharacterized protein LOC103482984

1.99e-61

97.12

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Query:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVA
        RSKAGKKKKKKK S IPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV IRSFEPLPPPVNDVA
Subjt:  RSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVA

Query:  NLPV
        NLPV
Subjt:  NLPV

A0A6J1C970 uncharacterized protein LOC111009130

4.86e-53

97.7

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Query:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVANLPV
        MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC STSSSV IRSFEPLPPPVNDVANLPV
Subjt:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSV-IRSFEPLPPPVNDVANLPV

A0A6J1E5Z9 uncharacterized protein LOC111430272

1.16e-53

96.51

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Query:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV
        MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV
Subjt:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV

A0A6J1ID63 uncharacterized protein LOC111471501

4.71e-53

94.19

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Query:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV
        MENQSTCL+YEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYCTSTSSS+IRSFEPLPPPVNDVANLPV
Subjt:  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G10810.1 unknown protein

1.1e-13

67.27

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Query:  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPL
        N ST  S EKL+  A+WV T+V SAFFASLERCSC+NLSTSDD ++ EE+H+RPL
Subjt:  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPL

AT4G24026.1 unknown protein

1.4e-11

56.14

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Query:  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTS--DDHEDPEEAHDRPL
        N ST  S EK++  A+W+  +V SAFF SLERC+C+NLSTS  DD +D +E+H RPL
Subjt:  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTS--DDHEDPEEAHDRPL

Sequences

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CDS sequence

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GGTCATAATAATCTAATAATAGAAATTGAGAAACGAAGAATTAAAAAAAAAAAATGTGCTGTCCTGTTAGACCCATCTTCCATTGTGTTGGCTGATTTTGTTGTGTGTTT
CCGCAGAAGATCCAAGGCAGGCAAGAAGAAGAAGAAGAAGAAGAAATCCCCCATACCCATGGAGAATCAAAGCACCTGTTTGTCCTATGAGAAGCTCAACGGAATGGCCA
CTTGGGTCGGTACCAGCGTTGCCTCCGCCTTTTTCGCCTCTCTTGAGCGATGTTCTTGCATCAATCTCTCCACCTCCGACGACCACGAAGATCCCGAAGAGGCCCATGAT
CGCCCTCTCATGTACTGCACCTCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCCCTTCCTCCCCCAGTCAATGATGTCGCCAATCTCCCCGTTTGA

mRNA sequence

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Protein sequence

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GHNNLIIEIEKRRIKKKKCAVLLDPSSIVLADFVVCFRRRSKAGKKKKKKKKSPIPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHD
RPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV

Cucsat.G21260 (gene) of Cucumber (B10) v3 genome