; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G21363 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G21363
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionYqgFc domain-containing protein
Genome locationctg910:1802604..1805732
RNA-Seq ExpressionCucsat.G21363
SyntenyCucsat.G21363
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143911.1 uncharacterized protein LOC101219574 [Cucumis sativus]1.57e-119100Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

XP_008437257.1 PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo]4.62e-10387.57Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

XP_022957830.1 uncharacterized protein LOC111459253 [Cucurbita moschata]6.75e-9684.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

XP_022995255.1 uncharacterized protein LOC111490857 [Cucurbita maxima]9.59e-9684.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

XP_038875331.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]1.42e-9783.93Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+PL LFRDL KR+ LEHGRLLGLDVGDKYVGLAVSDPDNKIA PLSVL+RKKT M LMA+DF+++IS+FSLAGFIVGYP  RLR NPDA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        D+LCKTGKLE VKYTFWDECFTSKNVELLIKPL L P +SKT++DKFAAVGILQGYLDYFNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein7.61e-120100Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

A0A1S3ATQ4 putative pre-16S rRNA nuclease isoform X12.24e-10387.57Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

A0A6J1E3H7 uncharacterized protein LOC1110261451.63e-9382.53Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+PL +FRDL  R+ LE GR LGLDVGDKYVGLAVSDPDN IA PLSVLLRKKT M LMA+D Q++ISE SLAGFIVGYPFDR R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL L P +SKTI+DKFAAVGILQGYLDY NRRPEL
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL

A0A6J1H0B7 uncharacterized protein LOC1114592533.27e-9684.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

A0A6J1K3L4 uncharacterized protein LOC1114908574.64e-9684.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

SwissProt top hitse value%identityAlignment
A4XKC6 Putative pre-16S rRNA nuclease7.0e-1535.17Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQD----FQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTF
        R+L LD+G + +G+A+SDP    A P  VL       DL  +D      K+ +E  +   ++GYP  +   +PD    K+  ID++C +  +   V    
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQD----FQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTF

Query:  WDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN
        WDE F++K VE +++  N+     K ++DK AAV ILQGYLD+ N
Subjt:  WDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN

B9MRK7 Putative pre-16S rRNA nuclease9.1e-1538.03Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIACP-LSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDE
        R+L LD+G+  VG+A+SDP    A P +++ LR K     + ++  K+   +++   ++GYP  +L  +PD    K+  ID++  K G    V+   WDE
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIACP-LSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDE

Query:  CFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN
         F++K VE +I    L     K IIDK AAV ILQGYLD++N
Subjt:  CFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN

Q1QL26 Putative pre-16S rRNA nuclease1.0e-1335Show/hide
Query:  EHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWD
        E G L+GLD+G K +G+AVSDPD ++A  +  L RK  T D  A     +  E + AGF++G P +      P A   + F  +L    +L  +    WD
Subjt:  EHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWD

Query:  ECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD
        E  ++  VE  +  +++  A    +ID+ AA+ ILQG LD
Subjt:  ECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD

Q3AEN4 Putative pre-16S rRNA nuclease1.7e-1336.23Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECF
        ++LGLDVGDK +G+A+SD     A  L+V+ R     DL  ++ +K+I    +   ++GYP +      P A  VK F  +L    K  G+K  FWDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECF

Query:  TSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDY
        ++   E L+   ++     K +IDK AA  IL GYL+Y
Subjt:  TSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDY

Q52673 Putative pre-16S rRNA nuclease2.2e-1336.23Show/hide
Query:  GRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
        G L GLD+G K +G+AVSD    IA PL  + R+K ++DL   D  K ++E  +AGF++G P +      P A   + F  +L    KL  +  TFWDE 
Subjt:  GRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC

Query:  FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD
         ++   E  +   +L       ++D  AA  ILQG LD
Subjt:  FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.6e-5259.88Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+PL L  +  K      GR LGLDVGDKYVGLA+SDP N +A PLSVLLRKK+ +DLMA DFQ ++  FS++G +VGYPF +L N  D + V +FI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR
        ++L KT KL+ VKYT+WDE  +SK VEL++KPLNL P   KT++DK AAV ILQ YLDY NR
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGC
CGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTT
CCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGCAAAACTGGAAAACTTGAA
GGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATT
TGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGC
CGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTT
CCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGCAAAACTGGAAAACTTGAA
GGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATT
TGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAG
Protein sequenceShow/hide protein sequence
MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLE
GVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET