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Cucsat.G21500 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G21500
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionReverse transcriptase
Genome locationctg936:32291..34460
RNA-Seq ExpressionCucsat.G21500
SyntenyCucsat.G21500
Gene Ontology termsGO:0046907 - intracellular transport (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039231.1 reverse transcriptase [Cucumis melo var. makuwa]6.78e-1555.56Show/hide
Query:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQE-HQEFVRDWGQRGICGARI
        M + R      EQLAQNQE +E  VLSPRTTSR LLS+EA  E ++ T+QEVLQRLE L         HQ+ HQE V DWGQ G+ GA I
Subjt:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQE-HQEFVRDWGQRGICGARI

KAA0047078.1 reverse transcriptase [Cucumis melo var. makuwa]3.30e-3262.07Show/hide
Query:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQNHQERR
        M + R+ P   EQ AQNQE +E  VLSP+TTSR LLS+EAS+E ++ T+Q VLQRLE LT PQ +HQE QE    VRDWGQRGI GA I R   NHQE R
Subjt:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQNHQERR

Query:  FEVQERTRPVQDYQKP
        ++VQER RP QDYQ P
Subjt:  FEVQERTRPVQDYQKP

KAA0051934.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.14e-0843.3Show/hide
Query:  PATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARIN---RVGQNHQERRF
        PA  EQ    QE  E  VLSPRT +R LLS+E S+ G++ T+  V++RL+ + HPQ   Q  +E Q     WG R   GA +    R+ +NHQERR 
Subjt:  PATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARIN---RVGQNHQERRF

TYK31047.1 protein transport protein sec24 [Cucumis melo var. makuwa]1.89e-1859.77Show/hide
Query:  ATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQN
        A  E  AQNQE D   VLS RT+ R LLSLEA +EG+Q T+QEVLQ LETL  PQ++H++ QE   FV++WGQRGI GA   RVG+N
Subjt:  ATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQN

TrEMBL top hitse value%identityAlignment
A0A5A7U9B2 Ty3-gypsy retrotransposon protein5.54e-0943.3Show/hide
Query:  PATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARIN---RVGQNHQERRF
        PA  EQ    QE  E  VLSPRT +R LLS+E S+ G++ T+  V++RL+ + HPQ   Q  +E Q     WG R   GA +    R+ +NHQERR 
Subjt:  PATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARIN---RVGQNHQERRF

A0A5D3BQN7 Reverse transcriptase3.28e-1555.56Show/hide
Query:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQE-HQEFVRDWGQRGICGARI
        M + R      EQLAQNQE +E  VLSPRTTSR LLS+EA  E ++ T+QEVLQRLE L         HQ+ HQE V DWGQ G+ GA I
Subjt:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQE-HQEFVRDWGQRGICGARI

A0A5D3C3X9 Reverse transcriptase1.60e-3262.07Show/hide
Query:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQNHQERR
        M + R+ P   EQ AQNQE +E  VLSP+TTSR LLS+EAS+E ++ T+Q VLQRLE LT PQ +HQE QE    VRDWGQRGI GA I R   NHQE R
Subjt:  MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQNHQERR

Query:  FEVQERTRPVQDYQKP
        ++VQER RP QDYQ P
Subjt:  FEVQERTRPVQDYQKP

A0A5D3E4P3 Protein transport protein sec249.16e-1959.77Show/hide
Query:  ATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQN
        A  E  AQNQE D   VLS RT+ R LLSLEA +EG+Q T+QEVLQ LETL  PQ++H++ QE   FV++WGQRGI GA   RVG+N
Subjt:  ATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATCACACGAAACCAACCGGCAACAACTGAGCAACTTGCTCAAAACCAAGAGATGGATGAAATATTTGTCCTCTCTCCAAGAACCACTTCAAGGCACTTGCTGTC
CTTGGAGGCTTCAATGGAGGGATTACAAACAACAATGCAGGAAGTCCTGCAAAGGTTAGAAACATTGACTCATCCACAACTAATGCATCAAGAACATCAAGAACATCAAG
AATTTGTTCGAGATTGGGGGCAACGAGGCATTTGTGGGGCTAGAATAAATAGAGTTGGGCAAAATCATCAAGAAAGAAGGTTTGAAGTTCAAGAAAGGACGAGACCAGTC
CAAGATTACCAAAAACCTCATAAAAAAACCAAGATTACTACCAAGAACCTCAAGATTGAAGCTCTACTGATGATGAACTGCAAGAAAAGACAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATCACACGAAACCAACCGGCAACAACTGAGCAACTTGCTCAAAACCAAGAGATGGATGAAATATTTGTCCTCTCTCCAAGAACCACTTCAAGGCACTTGCTGTC
CTTGGAGGCTTCAATGGAGGGATTACAAACAACAATGCAGGAAGTCCTGCAAAGGTTAGAAACATTGACTCATCCACAACTAATGCATCAAGAACATCAAGAACATCAAG
AATTTGTTCGAGATTGGGGGCAACGAGGCATTTGTGGGGCTAGAATAAATAGAGTTGGGCAAAATCATCAAGAAAGAAGGTTTGAAGTTCAAGAAAGGACGAGACCAGTC
CAAGATTACCAAAAACCTCATAAAAAAACCAAGATTACTACCAAGAACCTCAAGATTGAAGCTCTACTGATGATGAACTGCAAGAAAAGACAGTTGTGA
Protein sequenceShow/hide protein sequence
MAITRNQPATTEQLAQNQEMDEIFVLSPRTTSRHLLSLEASMEGLQTTMQEVLQRLETLTHPQLMHQEHQEHQEFVRDWGQRGICGARINRVGQNHQERRFEVQERTRPV
QDYQKPHKKTKITTKNLKIEALLMMNCKKRQL