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Cucsat.G2278 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G2278
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRhamnogalacturonan endolyase
Genome locationctg1002:2749822..2750424
RNA-Seq ExpressionCucsat.G2278
SyntenyCucsat.G2278
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030246 - carbohydrate binding (molecular function)
GO:0102210 - rhamnogalacturonan endolyase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647541.1 hypothetical protein Csa_003709 [Cucumis sativus]1.96e-66100Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

TYK12754.1 rhamnogalacturonate lyase B isoform X1 [Cucumis melo var. makuwa]3.24e-5887.38Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGP+TLSMFVSTHYAGKDVSMRF+EGEAWKKVFGPVFTY+NSDPTGT  PGSLW+DAKNQM IETS+WPYNFVES EFPSS+QRGSL GQLLVRD +A
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

XP_008440517.1 PREDICTED: rhamnogalacturonate lyase B isoform X1 [Cucumis melo]1.05e-5787.38Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGP+TLSMFVSTHYAGKDVSMRF+EGEAWKKVFGPVFTY+NSDPTGT  PGSLW+DAKNQM IETS+WPYNFVES EFPSS+QRGSL GQLLVRD +A
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

XP_008440518.1 PREDICTED: rhamnogalacturonate lyase B isoform X2 [Cucumis melo]3.69e-5887.38Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGP+TLSMFVSTHYAGKDVSMRF+EGEAWKKVFGPVFTY+NSDPTGT  PGSLW+DAKNQM IETS+WPYNFVES EFPSS+QRGSL GQLLVRD +A
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

XP_031742906.1 rhamnogalacturonate lyase B [Cucumis sativus]4.65e-66100Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

TrEMBL top hitse value%identityAlignment
A0A0A0KIQ2 Rhamnogalacturonan endolyase1.88e-66100Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

A0A1S3B1X3 Rhamnogalacturonan endolyase5.08e-5887.38Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGP+TLSMFVSTHYAGKDVSMRF+EGEAWKKVFGPVFTY+NSDPTGT  PGSLW+DAKNQM IETS+WPYNFVES EFPSS+QRGSL GQLLVRD +A
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

A0A1S3B219 Rhamnogalacturonan endolyase1.79e-5887.38Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGP+TLSMFVSTHYAGKDVSMRF+EGEAWKKVFGPVFTY+NSDPTGT  PGSLW+DAKNQM IETS+WPYNFVES EFPSS+QRGSL GQLLVRD +A
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

A0A5D3CNX4 Rhamnogalacturonan endolyase1.57e-5887.38Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGP+TLSMFVSTHYAGKDVSMRF+EGEAWKKVFGPVFTY+NSDPTGT  PGSLW+DAKNQM IETS+WPYNFVES EFPSS+QRGSL GQLLVRD +A
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  KYP
        KYP
Subjt:  KYP

A0A6J1HHQ6 Rhamnogalacturonan endolyase1.01e-4877.23Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA
        SHVGP TL++F S HYAGKD SMRF+EGEAWKKV GPVF Y+NSDPTGT  PGSLW+DAKNQMRIE  KWPY FVES EFP SE+RGS+SG+L+VRD FA
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFA

Query:  K
        K
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09880.1 Rhamnogalacturonate lyase family protein7.9e-3363.64Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF
        SHVGP  L++F STHY G D+ M F+ GEAWKKVFGPVF Y+NS P G   P  LW +AKNQ +IE  KWPYNF  S +FP+S+QRGS+SG+LLVRD F
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF

AT1G09890.1 Rhamnogalacturonate lyase family protein9.0e-2952.53Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF
        SHVGP  L++F+S HY G+D+  +F EGEAWKKVFGPVF Y+NS       P  LW DAK+QM +E   WPY+F  S ++  +EQRG++ G+LLV+D +
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF

AT1G09910.1 Rhamnogalacturonate lyase family protein8.2e-3057.58Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF
        SHVGP TL++F STHYAGK +  RF+ GE WKKV+GPVF Y+NS   G   P  LWDDAK +M  E  +WPY+FV S ++P SE+RG+  G+LL+RD F
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF

AT2G22620.1 Rhamnogalacturonate lyase family protein1.7e-2752.53Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF
        SH GP+TLSMF STHYAGK++ M ++ GE WKKVFGPV  Y+NS  +       LW DAK QM  E   WPY+F+ S ++P   QRG+L GQ L++D +
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF

AT4G24430.1 Rhamnogalacturonate lyase family protein1.5e-3158.59Show/hide
Query:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF
        SHVGP++L+MF+S HYAG+D+ M+ + G++WKKVFGPVFTY+N  P  T  P SLW DAKNQM  E   WPY+F  S +FP S++RG +SG+LLV D F
Subjt:  SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCCACGTCGGCCCCGTAACTCTTTCTATGTTTGTGAGTACACATTATGCGGGTAAAGACGTTTCCATGAGATTTCAAGAGGGAGAAGCTTGGAAGAAGGTTTTCGGACC
GGTTTTCACTTATATTAACTCCGACCCAACCGGAACTGGTAAACCCGGTTCACTCTGGGACGATGCTAAAAACCAGATGAGGATTGAAACAAGTAAATGGCCATACAACT
TTGTCGAATCCACAGAATTTCCATCGTCAGAACAAAGAGGAAGCTTGAGTGGTCAATTATTAGTCCGAGATGGATTCGCTAAGTACCCA
mRNA sequenceShow/hide mRNA sequence
TCCCACGTCGGCCCCGTAACTCTTTCTATGTTTGTGAGTACACATTATGCGGGTAAAGACGTTTCCATGAGATTTCAAGAGGGAGAAGCTTGGAAGAAGGTTTTCGGACC
GGTTTTCACTTATATTAACTCCGACCCAACCGGAACTGGTAAACCCGGTTCACTCTGGGACGATGCTAAAAACCAGATGAGGATTGAAACAAGTAAATGGCCATACAACT
TTGTCGAATCCACAGAATTTCCATCGTCAGAACAAAGAGGAAGCTTGAGTGGTCAATTATTAGTCCGAGATGGATTCGCTAAGTACCCA
Protein sequenceShow/hide protein sequence
SHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFAKYP