CuGenDBv2

Gene ID	Cucsat.G2489
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L34, chloroplastic
Genome location	ctg1002:5837090..5840725
RNA-Seq Expression	Cucsat.G2489
Synteny	Cucsat.G2489
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052628.1 50S ribosomal protein L34 [Cucumis melo var. makuwa]

2.48e-74

85.16

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHC                LSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]

7.93e-95

100

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]

9.94e-89

95.48

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]

2.40e-80

88.39

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWV +GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++ VGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]

1.92e-86

93.55

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVSTGA AVRVPSASLV STG RG CSVSLNT NN SARSGLLHCSFL SSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KI92 Uncharacterized protein

3.84e-95

100

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic

4.81e-89

95.48

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A5A7UBQ8 50S ribosomal protein L34

1.20e-74

85.16

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHC                LSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A5D3CSJ7 50S ribosomal protein L34

4.81e-89

95.48

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic

1.16e-80

88.39

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWV +GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++ VGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

SwissProt top hits

e value

%identity

Alignment

P82244 50S ribosomal protein L34, chloroplastic

1.6e-37

67.95

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Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKA
        MA +S+LST      AI  R PSASL F TGSR   +    + N  SARSG LHCSFL PSSSL  SS+FSGLSLGLD +S  GV   + R  VVRAGKA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKA

Query:  ALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        ALC TKR+RSRKSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Subjt:  ALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Q9LP37 50S ribosomal protein L34, chloroplastic

5.7e-32

65.16

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Query:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA
        +A S L  P  S G I   VPSASL   TG R   S SL     +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + RGLVVRAGKAA
Subjt:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Arabidopsis top hits

e value

%identity

Alignment

AT1G29070.1 Ribosomal protein L34

4.1e-33

65.16

Show/hide

Query:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA
        +A S L  P  S G I   VPSASL   TG R   S SL     +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + RGLVVRAGKAA
Subjt:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Sequences

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CDS sequence

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ATGGCAGCGATATCAGTATTATCGACCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCTTCAGCCTCTCTTGTATTCTCCACTGGTTCTAGAGGTTACTGCTC
CGTATCTCTGAACACCGTCAACAACAATTCTGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCCTGCTCTTCATCTTTCTCAGGTTTATCTT
TGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGGGTCGGGGCTTAGTGGTCAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGA
AAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGAGAACCACCAATGGTAGAGCTGTTCTCAAACGCAGACGTGCCAAGGGTAGGAAGGTCCTGTGCACAAAATC
CAACCCCAGCAGTGGAAAGCGTGCTTAA

mRNA sequence

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Protein sequence

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MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSR
KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Cucsat.G2489 (gene) of Cucumber (B10) v3 genome