; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G2565 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G2565
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationctg1002:6929309..6933287
RNA-Seq ExpressionCucsat.G2565
SyntenyCucsat.G2565
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052454.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa]1.71e-18499.29Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS AR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGAR

Query:  PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]9.54e-187100Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]1.11e-18599.3Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_022925730.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]1.02e-18197.54Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPP PPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_038882444.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]3.72e-18498.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein4.62e-187100Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein5.39e-18699.3Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein8.29e-18599.29Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS AR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGAR

Query:  PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1EJ14 Small nuclear ribonucleoprotein-associated protein4.94e-18297.54Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPP PPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1IQN3 Small nuclear ribonucleoprotein-associated protein1.35e-17996.13Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAP+IRPPGQMPMFPGQAPPP+GRGMPPP PPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSG

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'7.5e-4653.49Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
           G RP   PP    G P     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

P27048 Small nuclear ribonucleoprotein-associated protein B8.3e-4553.09Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPR
           G RP   PP    G P     PMG PP G  MR PPP  R
Subjt:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPR

Q58DW4 Small nuclear ribonucleoprotein-associated protein B'3.7e-4553.1Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+        PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
           G RP   PP    G P     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'1.7e-4552.71Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
           G RP   PP    G P     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'1.7e-4553.1Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
           G RP   PP    G P     PMG PP G  MR    PP PGM  PPP PG+ PP
Subjt:  QFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B7.6e-9476.14Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ

Query:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
          G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B7.6e-9476.14Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ

Query:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
          G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B7.6e-9476.14Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ

Query:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
          G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B7.6e-9476.14Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMFPGQAPPPIGRGMPPPVPPPQ

Query:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
          G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein1.3e-8571.13Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS
          A+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               IIRPPGQMP      PP  G+G PPP       
Subjt:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS

Query:  GARPGGAPPQPFPGPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ
            G  PP P P PPQ+   QRPM  PP G +MRGPPPP   GM  PPP RPGMPPP  G  P++ PP PGMPP PPN  NQQ
Subjt:  GARPGGAPPQPFPGPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAGCGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTC
TCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGT
GCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTC
CAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCTCAGAGA
CCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGG
CGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAGCGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTC
TCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGT
GCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTC
CAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCTCAGAGA
CCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGG
CGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
AAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQR
PMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ