CuGenDBv2

Gene ID	Cucsat.G2596
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Rhamnogalacturonan endolyase
Genome location	ctg1002:2750431..2750849
RNA-Seq Expression	Cucsat.G2596
Synteny	Cucsat.G2596
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0005576 - extracellular region (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030246 - carbohydrate binding (molecular function) GO:0102210 - rhamnogalacturonan endolyase activity (molecular function)
InterPro domains	IPR013784 - Carbohydrate-binding-like fold IPR029413 - Rhamnogalacturonan lyase, domain II

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8647541.1 hypothetical protein Csa_003709 [Cucumis sativus]

1.25e-70

100

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        EFYIPSP
Subjt:  EFYIPSP

TYK12754.1 rhamnogalacturonate lyase B isoform X1 [Cucumis melo var. makuwa]

8.43e-67

96.23

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Query:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE
        DSAYVGLAAPGELGSWQRESKGYQFWTRAD+HGYFSIDNIRSGTYNLYAWVPGVLGDYKYD +ITITPRSSTNLNLLVF PPRQGPTLWEIGIPDRKAAE
Subjt:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE

Query:  FYIPSP
        FYIPSP
Subjt:  FYIPSP

XP_008440517.1 PREDICTED: rhamnogalacturonate lyase B isoform X1 [Cucumis melo]

3.41e-66

96.23

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Query:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE
        DSAYVGLAAPGELGSWQRESKGYQFWTRAD+HGYFSIDNIRSGTYNLYAWVPGVLGDYKYD +ITITPRSSTNLNLLVF PPRQGPTLWEIGIPDRKAAE
Subjt:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE

Query:  FYIPSP
        FYIPSP
Subjt:  FYIPSP

XP_008440518.1 PREDICTED: rhamnogalacturonate lyase B isoform X2 [Cucumis melo]

9.80e-67

96.23

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Query:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE
        DSAYVGLAAPGELGSWQRESKGYQFWTRAD+HGYFSIDNIRSGTYNLYAWVPGVLGDYKYD +ITITPRSSTNLNLLVF PPRQGPTLWEIGIPDRKAAE
Subjt:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE

Query:  FYIPSP
        FYIPSP
Subjt:  FYIPSP

XP_031742906.1 rhamnogalacturonate lyase B [Cucumis sativus]

3.14e-70

100

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        EFYIPSP
Subjt:  EFYIPSP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIQ2 Rhamnogalacturonan endolyase

1.25e-70

100

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        EFYIPSP
Subjt:  EFYIPSP

A0A1S3B1X3 Rhamnogalacturonan endolyase

1.65e-66

96.23

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Query:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE
        DSAYVGLAAPGELGSWQRESKGYQFWTRAD+HGYFSIDNIRSGTYNLYAWVPGVLGDYKYD +ITITPRSSTNLNLLVF PPRQGPTLWEIGIPDRKAAE
Subjt:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE

Query:  FYIPSP
        FYIPSP
Subjt:  FYIPSP

A0A1S3B219 Rhamnogalacturonan endolyase

4.74e-67

96.23

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Query:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE
        DSAYVGLAAPGELGSWQRESKGYQFWTRAD+HGYFSIDNIRSGTYNLYAWVPGVLGDYKYD +ITITPRSSTNLNLLVF PPRQGPTLWEIGIPDRKAAE
Subjt:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE

Query:  FYIPSP
        FYIPSP
Subjt:  FYIPSP

A0A5D3CNX4 Rhamnogalacturonan endolyase

4.08e-67

96.23

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Query:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE
        DSAYVGLAAPGELGSWQRESKGYQFWTRAD+HGYFSIDNIRSGTYNLYAWVPGVLGDYKYD +ITITPRSSTNLNLLVF PPRQGPTLWEIGIPDRKAAE
Subjt:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE

Query:  FYIPSP
        FYIPSP
Subjt:  FYIPSP

A0A6J1GG74 Rhamnogalacturonan endolyase

4.12e-55

80.37

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        GDSAYVGLAAPGELGSWQ ESKGYQFWTRAD  GYFSI+NIR G YNLYAWVPGV+GDYKY N IT+T  S+T L LL++ PPRQGPTLWEIG+PDR AA
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        EFYIP P
Subjt:  EFYIPSP

SwissProt top hits

e value

%identity

Alignment

A5ABH4 Probable rhamnogalacturonate lyase B

1.6e-09

30.49

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Query:  SKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEF
        S  YQ+W   DD G+FS+D+++ G Y L  +  G+ GD+  D  + +     T +    +     G  +W +G PD+ + EF
Subjt:  SKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEF

Q5AZ85 Rhamnogalacturonate lyase B

2.8e-09

34.18

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Query:  YQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEF
        +Q+W   D +G FSID + +G Y L  +  G+ GD+  D  I +  R ST++    + P   G  +W +G PD+ + EF
Subjt:  YQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEF

Arabidopsis top hits

e value

%identity

Alignment

AT1G09880.1 Rhamnogalacturonate lyase family protein

1.5e-39

64.15

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Query:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE
        + +YVGLAAPG++GSWQRE KGYQFW++AD++G FSI+N+RSG YNLYA+ PG +GDY  D    I+P S  +L  LV+ PPR G TLWEIG+PDR AAE
Subjt:  DSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAE

Query:  FYIPSP
        FYIP P
Subjt:  FYIPSP

AT2G22620.1 Rhamnogalacturonate lyase family protein

5.3e-40

65.42

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        G  A+VGLA  GE GSWQ ESKGYQFWT+AD  G F I+N+R+G Y+LYAW  G +GDYKY+  ITITP S  N+  LV+ PPR GPTLWEIG+PDR A 
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        EFYIP P
Subjt:  EFYIPSP

AT2G22620.2 Rhamnogalacturonate lyase family protein

5.3e-40

65.42

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        G  A+VGLA  GE GSWQ ESKGYQFWT+AD  G F I+N+R+G Y+LYAW  G +GDYKY+  ITITP S  N+  LV+ PPR GPTLWEIG+PDR A 
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        EFYIP P
Subjt:  EFYIPSP

AT4G37950.1 Rhamnogalacturonate lyase family protein

9.0e-40

66.36

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        G  A+VGLA PGE GSWQ E+KGYQFWTRAD  G F+I N+R GTY+LYAWV G +GDYKY   ITITP    ++  +V+ PPR GPTLWEIG PDR AA
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        EFYIP P
Subjt:  EFYIPSP

AT4G38030.1 Rhamnogalacturonate lyase family protein

1.5e-39

59.81

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Query:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA
        G SAYVGLA PGE GSWQ  +KGYQFWT+ ++ GYF+I+N+R GTYNLY WVPG +GD++Y N + +   S  +L  +V+ PPR GPTLWEIG+PDR A 
Subjt:  GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAA

Query:  EFYIPSP
        E++IP P
Subjt:  EFYIPSP

Sequences

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CDS sequence

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GGAGATTCCGCTTATGTGGGCCTTGCTGCTCCTGGGGAACTAGGGTCTTGGCAAAGAGAAAGCAAGGGATATCAATTTTGGACACGAGCGGACGATCATGGATACTTCTC
AATTGATAACATTAGATCGGGAACTTACAATTTATATGCTTGGGTACCTGGTGTCCTTGGTGATTACAAGTATGATAACCAAATCACCATCACACCAAGAAGTTCCACTA
ATCTAAATTTGTTGGTCTTTCACCCTCCAAGACAGGGCCCAACTTTGTGGGAGATTGGCATCCCAGATCGGAAGGCAGCTGAGTTCTATATACCAAGTCCT

mRNA sequence

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Protein sequence

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GDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEFYIPSP

Cucsat.G2596 (gene) of Cucumber (B10) v3 genome